BQ623274

Overview
NameBQ623274
Unique NameBQ623274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_MOUSE (Glutaredoxin-2, mitochondrial OS=Mus musculus GN=Glrx2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 247
            N VV+FSKT C YC+  K++   +  ++K VELD+   G++ Q AL + TG+RTVP +F+ G+ IGG       H+ GKL+P
Sbjct:   60 NCVVIFSKTSCSYCSMAKKIFHDMNVNYKAVELDMLEYGNQFQDALHKMTGERTVPRIFVNGRFIGGAADTHRLHKEGKLLP 141          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            N + +FSKTYC Y  R K + + L  +  +VELD+  DG +IQ+ L +  G+ TVP VF+ G+H+GG D     H  G+L
Sbjct:   41 NRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQL 120          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX1_YEAST (Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYC----TRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            N + V SKTYC YC      + E LK   +   V++L+   +G+ IQAAL E  GQRTVPN++I GKHIGG D + E  + G+L
Sbjct:   17 NEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGEL 100          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX1_SCHPO (Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 2
Query:    2 NPVVVFSKTYCGYCTRVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 202
            N VVVF+K+YC YC   ++++       +V ++D+ ++G +IQ+ L + TGQRTVPN+FI  KH+GG
Sbjct:   15 NDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGG 81          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    8 VVVFSKTYCGYC-TRVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 241
            V V +KTYC YC   +  L ++L    +   V+ELD  S+GS+IQ AL E +GQ+TVPNV+I GKHIGG   +    + GKL
Sbjct:   53 VFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKL 134          
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    8 VVVFSKTYCGYCTRVKELLKQLGTSFKVVE-LDIESDG--SKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 244
            VVVF K  C YC + +ELL QL     ++E +DI + G  S+IQ  L + TG RTVP VFIG + IGGC  +V  H+ G+L+
Sbjct:   15 VVVFIKPTCPYCRKTQELLSQLPFKQGLLEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELL 96          
The following BLAST results are available for this feature:
BLAST of BQ623274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GLRX2_MOUSE4.429e-1543.90Glutaredoxin-2, mitochondrial OS=Mus musculus GN=G... [more]
GRXS6_ORYSJ5.785e-1542.50Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX1_YEAST3.510e-1246.43Glutaredoxin-1 OS=Saccharomyces cerevisiae GN=GRX1... [more]
GLRX1_SCHPO1.742e-1144.78Glutaredoxin-1 OS=Schizosaccharomyces pombe GN=grx... [more]
GLRX2_YEAST3.880e-1147.56Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX1_BOVIN8.645e-1147.56Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00365 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00365 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623274 ID=BQ623274; Name=BQ623274; organism=Citrus sinensis; type=EST; length=489bp
CAATCCCGTCGTCGTCTTCAGCAAAACCTACTGTGGTTATTGTACAAGGG
TGAAGGAGTTGCTTAAACAGCTTGGAACGAGTTTCAAAGTCGTAGAATTG
GATATTGAAAGTGATGGAAGTAAAATTCAAGCAGCTCTGGCAGAGTGGAC
TGGGCAGAGAACCGTACCCAATGTGTTCATTGGGGGAAAACACATCGGTG
GCTGCGACACTGTAGTAGAGAAGCACCAAGGAGGAAAGCTGGTCCCCCTT
CTTCGTGATGCCGGTGCCCTCGCCCTTGCTGACAAATGATAATTTTGCTC
CGTTAAGATCAGAACCACAAGTTCGTGTACATGGGCTGAAGTGAAGAAAT
GCAACAATATTAAAGTGACCAATTATATGGTGTGTAAAAGTAACAATCGA
TGTCCACTTTATTTGTGTGTGTGTGTGGGGGGTTTATAGACATTTCTCTG
CTTGATTGGAAGGAAAATGAGAGATATGCATGCGTTGCT
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