BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:263..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_RAT (Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.029e-13
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 449
            LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   +D + E +   +DG+SG+D+  LC  A+  P                  + A     S   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  543 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGP--------------IRSLHTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 676
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  353 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  353 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  353 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 34/76 (44.74%), Postives = 56/76 (73.68%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + +LA+DV+++ IA   +GYSG+D+ N+C  A+
Sbjct:  348 MVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADITNVCRDAS 423
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 35/76 (46.05%), Postives = 54/76 (71.05%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R +++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  353 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIRLEDIAEKIEGYSGADITNVCRDAS 428
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_XENTR (Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.168e-13
Identity = 51/150 (34.00%), Postives = 77/150 (51.33%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 449
            LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  ++AKE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  522 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITPEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 655
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DANRE (Spastin OS=Danio rerio GN=spast PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 48/149 (32.21%), Postives = 80/149 (53.69%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-EELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V LP    R K+++ +L+K     S  +L  +A + DGYSGSDL +L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +++ ++WN  YG+
Sbjct:  434 LVMGATNRPQELDEAVLRRFAKRIYVALPTEETRLKLLKNLLSKHRNPLSQKELSQLARLTDGYSGSDLTSLAKDAALGPIRELKPEQVRN--------------MSAHEMRDIRISDFLESLKRIKRSVSPQT--LDQYVRWNREYGD 566
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: KATL1_SORAR (Katanin p60 ATPase-containing subunit A-like 1 OS=Sorex araneus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 35/76 (46.05%), Postives = 53/76 (69.74%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATN P+D+DEA+ RRL +R+ + LP A  R  ++++ L + EL  D+ LE IA   +GYSG+D+ N+C  A+
Sbjct:  353 MVLAATNFPWDIDEALRRRLEKRIYIPLPTAKGRTDLLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDAS 428
[Close]
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_XENLA (Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = 3 
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 449
            LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE  + ++ ++E I   ADG+SG+D+  LC  AA  P                          ++  VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  521 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTEQEVEAIVLQADGFSGADMTQLCREAALGPIRSIQLMDI--------------STITAEQVRPIAYIDFQSAFLVVRPSVSQKDLELYE--NWNKTFGCG 654
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
FIGL1_RAT3.029e-1333.33Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fi... [more]
KATL1_PAPAN3.957e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA3.957e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN3.957e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KTNA1_DANRE5.168e-1344.74Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KATL1_RABIT5.168e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FIGL1_XENTR5.168e-1334.00Fidgetin-like protein 1 OS=Xenopus tropicalis GN=f... [more]
SPAST_DANRE6.749e-1332.21Spastin OS=Danio rerio GN=spast PE=2 SV=2[more]
KATL1_SORAR6.749e-1346.05Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
FIGL1_XENLA6.749e-1333.33Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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