BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:263..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae GN=spas-1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 239
            LV+ ATNRP++LD+AV+RR P+R+M+NLPD   R+++I   L K ++    S  D+  IA+   G+S SDL  LC  AA  P
Sbjct:  408 LVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGLSSSDIRYIASNTSGFSNSDLVALCKEAAMVP 489          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_ANOGA (Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAA 230
            +V+AATNRP +LDEA +RR P+R+ V LPD   RE ++R +L K+    SD DL  +A + +GYSGSDL  L   AA
Sbjct:  643 VVMAATNRPQELDEAALRRFPKRVYVTLPDRDTRELLLRRLLQKQGSPLSDADLAHLAQLTEGYSGSDLTALARDAA 719          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGEG 449
            LV+ ATNRP ++DEA  RRL +RL + LP+A  R++I+  +++KE+   S+ ++E I   +D +SG+D+  LC  A+  P                    A     +   VRP+   DF+ A   V  SVS +   + E   WN+ +G G
Sbjct:  540 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGP--------------IRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 673          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROMO (Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 52/151 (34.44%), Postives = 78/151 (51.66%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LP+   RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  630 VVLAATNRPQELDEAALRRFTKRVYVSLPEVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 762          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROWI (Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + +GYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  642 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 774          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 239
            LVL ATNRP D+DEA+ RR+P+   + LP+A  R KI+ + L K  L ++ D  G+ N   G SGS +K +C +A   P
Sbjct:  230 LVLGATNRPADIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKKVPLEANFDWNGVVNATAGLSGSYIKEVCRSALSVP 308          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROVI (Spastin OS=Drosophila virilis GN=spas PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 52/151 (34.44%), Postives = 77/151 (50.99%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMA---DGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LP    RE ++  +L K+   S +D E +A +A   DGYSGSDL  L   AA  P                  N           +RP+   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  634 VVLAATNRPQELDEAALRRFTKRVYVSLPGVQTRELLLSRLLQKQ--GSPLDTEALARLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRPITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 766          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_CAEEL (Probable spastin homolog spas-1 OS=Caenorhabditis elegans GN=spas-1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 47/150 (31.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDV---DLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYG 443
            LV+ ATNRP +LD+AV+RR P+R+M+NLPD   R+++I   L K  +   +   D+  IA+   G+S SDL  LC  AA  P                  +R+   +     +R ++  DF  A   +  S S +   M++L  ++  +G
Sbjct:  378 LVIGATNRPHELDDAVLRRFPKRIMLNLPDEEARKELITKTLKKHNMMDGLISSDIRYIASNTSGFSNSDLVALCKEAAMVP--------------IREIDRSKLSMTDGEKIRKIRASDFDTALRTIRPSTSQKI--MSKLSDFSRSFG 511          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: MSP1_CAEEL (Mitochondrial sorting homolog OS=Caenorhabditis elegans GN=mspn-1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLC 218
            +V+ ATNRP D+D A++RR+  R  V +P+A  R +I+ VIL  E++ + V+L  IA  A+G SGSDLK +C
Sbjct:  222 IVMGATNRPRDVDAAILRRMTARFQVPVPNAKQRSQILNVILRNEKINNTVNLGEIAQAAEGLSGSDLKEVC 293          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROYA (Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  623 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SPAST_CAEBR8.814e-1346.34Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
SPAST_ANOGA8.814e-1350.65Spastin OS=Anopheles gambiae GN=spas PE=3 SV=5[more]
FIGL1_HUMAN1.151e-1232.67Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
SPAST_DROMO2.565e-1234.44Spastin OS=Drosophila mojavensis GN=spas PE=3 SV=1[more]
SPAST_DROWI3.349e-1233.56Spastin OS=Drosophila willistoni GN=spas PE=3 SV=1[more]
YJNA_SCHPO4.375e-1244.30Uncharacterized AAA domain-containing protein C24B... [more]
SPAST_DROVI5.713e-1234.44Spastin OS=Drosophila virilis GN=spas PE=3 SV=1[more]
SPAST_CAEEL5.713e-1231.33Probable spastin homolog spas-1 OS=Caenorhabditis ... [more]
MSP1_CAEEL5.713e-1247.22Mitochondrial sorting homolog OS=Caenorhabditis el... [more]
SPAST_DROYA7.462e-1233.56Spastin OS=Drosophila yakuba GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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