BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:263..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROSE (Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  623 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROME (Spastin OS=Drosophila melanogaster GN=spas PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  623 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROER (Spastin OS=Drosophila erecta GN=spas PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  623 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 755          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDLEGIANMADGYSGSDLKNLCVTAA 230
            +++ ATNR  D+D+A +RRLP+R +V+LP +  R KI+ V+L   +L  D  DL+ IA+   G+SGSDLK LC  AA
Sbjct:  230 MIIGATNRINDIDDAFLRRLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAA 306          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROGR (Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEG-IANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D  G +A + +GYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  647 VVLAATNRPQELDEAALRRFTKRVYVSLPDVQTRELLLNRLLQKQGSPLDSDALGRLAKITEGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRQITEKDFHNSLKRIRRSVAPQSLNSYE--KWSQDYGD 779          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROAN (Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 50/149 (33.56%), Postives = 74/149 (49.66%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D + L  +A   DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S N  E  +W++ YG+
Sbjct:  635 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLSRLLQKQGSPLDTEALRRLAKTTDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDISAMRAITESDFHSSLKRIRRSVAPQSLNSYE--KWSQDYGD 767          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_RAT (Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  446 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 578          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_MOUSE (Spastin OS=Mus musculus GN=Spast PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  479 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 611          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_HUMAN (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  481 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 613          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROPE (Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA  P                  N           +R +   DF  + +++  SV+ +S ++ E  +W+  YG+
Sbjct:  653 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAALEP--------------IRELNVEQVKCLDINAMRHITEKDFHNSLKRIRRSVAPQSLSLYE--KWSSDYGD 785          
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SPAST_DROSE7.462e-1233.56Spastin OS=Drosophila sechellia GN=spas PE=3 SV=1[more]
SPAST_DROME7.462e-1233.56Spastin OS=Drosophila melanogaster GN=spas PE=1 SV... [more]
SPAST_DROER7.462e-1233.56Spastin OS=Drosophila erecta GN=spas PE=3 SV=1[more]
MSP1_YEAST7.462e-1248.05Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
SPAST_DROGR1.273e-1133.56Spastin OS=Drosophila grimshawi GN=spas PE=3 SV=1[more]
SPAST_DROAN1.662e-1133.56Spastin OS=Drosophila ananassae GN=spas PE=3 SV=1[more]
SPAST_RAT2.171e-1130.87Spastin OS=Rattus norvegicus GN=Spast PE=2 SV=1[more]
SPAST_MOUSE2.171e-1130.87Spastin OS=Mus musculus GN=Spast PE=2 SV=3[more]
SPAST_HUMAN2.171e-1130.87Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
SPAST_DROPE3.703e-1132.89Spastin OS=Drosophila persimilis GN=spas PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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