BQ623275

Overview
NameBQ623275
Unique NameBQ623275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig260 contig Csv1_Contig260:263..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 45/149 (30.20%), Postives = 80/149 (53.69%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LD+AV+RR  +R+ V+LP+   R  +++ +L+K+    +  +L  +A M DGYSGSDL  L   AA  P                          S+ ++R +K+ DF  + +++  S+S ++  +   ++WN+ +G+
Sbjct:  478 LVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELAQLARMTDGYSGSDLTALVKDAALGPIRELKPEQVKN--------------MSASEMRNIKLSDFTESLKKIKRSLSPQT--LEAYIRWNKDFGD 610          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A + DGYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  478 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARLTDGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 610          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_DROPS (Spastin OS=Drosophila pseudoobscura pseudoobscura GN=spas PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVD-LEGIANMADGYSGSDLKNLCVTAA 230
            +VLAATNRP +LDEA +RR  +R+ V+LPD   RE ++  +L K+    D D L  ++ + DGYSGSDL  L   AA
Sbjct:  653 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTDALRRLSKITDGYSGSDLTALAKDAA 729          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_BRUMA (Probable spastin homolog Bm1_53365 OS=Brugia malayi GN=Bm1_53365 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL---EGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVS 392
            LV+ ATNRP +LD A++RR P+R+++++P+A  R K+I  +L K + + D+ L   + +A    GYS SDL  LC  AA  P                  +R       S ++RP+ + DF+ A + +  S +
Sbjct:  318 LVIGATNRPEELDSAILRRFPKRILIDVPNAAARLKLIMSLLEKTKTSFDLGLTQRQILAEWTHGYSNSDLVALCREAAMVP--------------IRDLSRKDIKNLVSTELRPITLRDFEIAMKAIKPSTN 436          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: SPAST_BOVIN (Spastin OS=Bos taurus GN=SPAST PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 45/149 (30.20%), Postives = 79/149 (53.02%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPXXXXXXXXXXXXXXXXXXNRASPPLYSSVDVRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNELYGE 446
            LV+ ATNRP +LDEAV+RR  +R+ V+LP+   R  +++ +L K+    +  +L  +A M +GYSGSDL  L   AA  P                          S+ ++R +++ DF  + +++  SVS ++  +   ++WN+ +G+
Sbjct:  479 LVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTNGYSGSDLTALAKDAALGPIRELKPEQVKN--------------MSASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIRWNKDFGD 611          
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Match: FIGL1_CAEBR (Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 37/81 (45.68%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    3 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL--AKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 239
            LVL ATNRP +LDEA  RR  +RL + LP+  +R +I+  +L   + E+ +D +LE I  + DGYSG+D++ LC  AA  P
Sbjct:  455 LVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEI-TDHNLEKIRRLTDGYSGADMRQLCTEAAMGP 534          
The following BLAST results are available for this feature:
BLAST of BQ623275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
SPAST_CHICK3.703e-1130.20Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]
SPAST_PIG4.837e-1130.20Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
SPAST_DROPS4.837e-1148.05Spastin OS=Drosophila pseudoobscura pseudoobscura ... [more]
SPAST_BRUMA4.837e-1132.33Probable spastin homolog Bm1_53365 OS=Brugia malay... [more]
SPAST_BOVIN4.837e-1130.20Spastin OS=Bos taurus GN=SPAST PE=2 SV=1[more]
FIGL1_CAEBR4.837e-1145.68Fidgetin-like protein 1 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00366 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623275 ID=BQ623275; Name=BQ623275; organism=Citrus sinensis; type=EST; length=602bp
TTCTGGTACTTGCTGCTACCAATAGGCCTTTTGACCTTGATGAGGCTGTT
GTTAGGAGGCTTCCAAGGAGATTGATGGTTAACTTGCCAGATGCCCCAAA
CAGAGAAAAGATTATAAGAGTTATCTTGGCCAAAGAAGAATTGGCATCTG
ATGTGGATTTGGAAGGAATTGCAAACATGGCTGATGGGTACTCTGGAAGT
GATCTAAAGAACCTGTGTGTGACTGCCGCACATTGTCCCATACGAGAAAT
TTTGGAGAAGGAAAAGAAGGAGAGAGCTTTAGCATTGGCCGAGAATAGAG
CTTCACCTCCATTGTACAGCAGCGTCGACGTTCGCCCTCTGAAGATGGAC
GATTTCAAATATGCACATGAGCAGGTGTGTGCAAGTGTATCATCAGAGTC
TACAAATATGAATGAGCTCCTTCAATGGAATGAACTATATGGAGAAGGGT
GGATCGAGGAAAAGGAAATCTCTGAGCTACTTTATGTAGAAGGTGGTATC
TCTTTTGTATAGCATTCTTGTGTGGTTTATTCGTCTTTATCATCCTAAAT
GATGGCCAAGATCAGGGACCTGTATTTATGGAGAATTCTGTTGGGGCTGT
CC
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