BQ623277

Overview
NameBQ623277
Unique NameBQ623277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:780..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.632e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  141 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 488
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.967e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  141 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 488
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.967e-45
Identity = 87/116 (75.00%), Postives = 96/116 (82.76%), Query Frame = 3
Query:  141 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 488
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.900e-44
Identity = 88/124 (70.97%), Postives = 98/124 (79.03%), Query Frame = 3
Query:  120 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXX-AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 488
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.333e-40
Identity = 77/103 (74.76%), Postives = 84/103 (81.55%), Query Frame = 3
Query:    3 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 311
            WAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+                AFDPLGLA+DP+ F
Sbjct:  103 WAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 79/151 (52.32%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    3 WAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 452
            WAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  NN
Sbjct:  120 WAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDKLHPGGP--FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.561e-26
Identity = 66/117 (56.41%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  144 LIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA---FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNA-WAYATNFVP 482
            LIHA+S+LAI A QV+LMG VEGYR                     FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP A+N   A  T F P
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.193e-19
Identity = 61/169 (36.09%), Postives = 82/169 (48.52%), Query Frame = 3
Query:    3 WAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 452
            +AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV NN
Sbjct:  106 FAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.953e-18
Identity = 59/169 (34.91%), Postives = 81/169 (47.93%), Query Frame = 3
Query:    3 WAMLGALGCVFPEILSKNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR-----------------IXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANN 452
            +AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R                 +                 F+PLG   D     ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV NN
Sbjct:  108 FAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 61/152 (40.13%), Postives = 77/152 (50.66%), Query Frame = 3
Query:    3 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 452
            WAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:   94 WAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of BQ623277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB2D_SOLLC7.632e-4575.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC9.967e-4575.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC9.967e-4575.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.900e-4470.97Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_SILPR4.333e-4074.76Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_ARATH4.344e-3252.32Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR3.561e-2656.41Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC7.193e-1936.09Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA7.953e-1834.91Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC3.947e-1740.13Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00368 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00368 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623277 ID=BQ623277; Name=BQ623277; organism=Citrus sinensis; type=EST; length=646bp
GATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCC
AAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCA
AATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTC
ATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGT
TTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGA
CCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACC
CCGATCAATTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTG
GCTATGTTCTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAA
GGGTCCAATTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACA
ATGCCTGGGCTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCA
TGACTTGAATGGTGTCTTTTTCAGCTGTACATTATTCTATGTATCGTATG
TGCTTTTGGGGGAAAACTCTGTCATGGACTTATTAGTAGCTCTGTAATGG
TACCATTAGAAATGCTATGCTCCTGATCTTTTATTTCCAAAAAAAA
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