BQ623284

Overview
NameBQ623284
Unique NameBQ623284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:160..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 3.403e-40
Identity = 82/126 (65.08%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    4 TATSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            + T+ KA  N      GLK +  RG   VAMA+YKVKL+TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   25 SVTTTKAFSN---GFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.293e-39
Identity = 73/96 (76.04%), Postives = 84/96 (87.50%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 378
            ATYKV L+TP G + I+CPDD+++LDAAEEAGLDLPYSCRAG+CSSC GKV +GTVDQ +QSFLDDDQI  GFVLTC AYP  DVTIETHKEE++A
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.881e-39
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1
Query:   88 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:    1 MASYTVKLITPDGENSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.881e-39
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1
Query:   88 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MA+Y VKLITP GE  I C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ +G+VDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEE+L
Sbjct:    1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.881e-39
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            ATYKV L+TP G + I+CPDD+++LDAAEEAGLDLPYSCRAG+CSSCTGKV +GTVDQ +QSFLDDDQI  GFVLTC A+P  DVTIETHKEE++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 6.418e-39
Identity = 75/106 (70.75%), Postives = 87/106 (82.08%), Query Frame = 1
Query:   58 KANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            K  RG R+ A ATYKVKL+TP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQ+  G+VLTC AYP SD+ IETHKEEEL
Sbjct:   36 KQVRGARLRAQATYKVKLVTPEGEVELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.382e-39
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 381
            ATYKVKLITP G  E NCPDD +ILD+AEE G DLPYSCRAGACSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:    1 ATYKVKLITPEGPVEFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.382e-39
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 381
            ATYKVKL+TP G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.382e-39
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 381
            ATYKVKL+TP G  E NCPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:    1 ATYKVKLVTPDGPVEFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/97 (77.32%), Postives = 81/97 (83.51%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 381
            A+YKVKLITP G  E NCPDD +ILD AEE G DLPYSCRAGACSSC GK+V G+VDQS+ SFLDDDQIG GFVLTC AYP S+VTIETHKEE L G
Sbjct:    1 ASYKVKLITPDGPIEFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97          
The following BLAST results are available for this feature:
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_PEA3.403e-4065.08Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_PHYES1.293e-3976.04Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_SYNY42.881e-3977.08Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY32.881e-3977.08Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER1_PHYAM2.881e-3975.79Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER_WHEAT6.418e-3970.75Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SOLLY8.382e-3975.26Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_DATST8.382e-3975.26Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU8.382e-3975.26Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_SOLLS1.095e-3877.32Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00375 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623284 ID=BQ623284; Name=BQ623284; organism=Citrus sinensis; type=EST; length=461bp
CCTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATT
TGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGAT
GACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTA
CTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTG
GAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGA
GAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTAT
AGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATA
TCTCATTATTATCTTCTCTTTTATGTGTTGGGTTTTGGCTGATTATTTTA
ATGCTTTGAAA
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