BQ623284

Overview
NameBQ623284
Unique NameBQ623284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:160..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.216e-34
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 1
Query:   91 ATYKVKLITPGGEEEINCPDDSFILD-AAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            ATYKV LITP G++E   PDD +ILD AAEE G DLPYSCRAG+CSSC GKV +G+VDQS+ S+LDDDQ+  G+VLTC AYPTSDVTIETHKEEEL
Sbjct:    1 ATYKVTLITPEGKQEFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 1.060e-33
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1
Query:   88 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MA YKV+LI    G +  I CPDD +ILDAAEE G+DLPYSCRAGACS+C GKVV GTVDQS+QSFLDD Q+  G+VLTC AYP+SD T++TH+EE L
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.385e-33
Identity = 67/94 (71.28%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   94 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            +Y V L TP GE+++    DS+ILDAAEEAG+DLPYSCRAG+CSSC GKV SGTVDQS+QSFLDDDQ+  GFVLTC AY TSD TI TH+EE L
Sbjct:    1 SYMVTLKTPSGEQKVEVSPDSYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.809e-33
Identity = 70/100 (70.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   88 MATYKVKLITPGGEEEIN----CPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MATYKV LI+   E +IN    C DD F+LDAAEEAG+DLPYSCRAGACS+C GKV  GT+DQSEQ+FLDDDQ+G GFVLTC AYP SD TI  H+E+EL
Sbjct:    1 MATYKVTLISE--EHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 1
Query:   55 LKANRGGRVVAMATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            LK ++   V AMA YKVKL+ P GEE E + PDD++ILDAAE AG++LPYSCRAGACS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   44 LKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   91 ATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            A+YK+ L+    G +E I CPDD +ILDAAEE GLDLPYSCRAGACS+C GK++ G VDQS+QSFLDDDQ+  GFVLTC AYPTS+ TI TH+EE L
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESL 97          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.029e-33
Identity = 71/112 (63.39%), Postives = 85/112 (75.89%), Query Frame = 1
Query:   49 FGLK--ANRGGRVVAMATYKVKLITPGGEE-EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            FGLK  AN GG  ++ A YKVKL+ P G+E E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:   44 FGLKCSANSGGATMS-AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.262e-33
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 1
Query:   94 TYKVKLITPGGEEEIN----CPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            TY V L+    E+ IN    CPDD FILDAAEE G++LPYSCRAGACS+C GKV+SGT+DQSEQSFLDDDQ+G GF+LTC AYPTSD  ++TH E++L
Sbjct:    2 TYSVTLVNE--EKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 5.262e-33
Identity = 65/96 (67.71%), Postives = 73/96 (76.04%), Query Frame = 1
Query:   88 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            MA+YKV L TP G+  I  PDD +ILD AEE GLDLPYSCRAGACS+C GK+VSG     +QSFLDDDQI  G++LTC AYPT D  IETHKEE L
Sbjct:    1 MASYKVTLKTPDGDNVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 6.873e-33
Identity = 67/111 (60.36%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   49 FGLKANRGGRVVAMATYKVKLIT--PGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 375
            FGLK+   GR+  MATYKV  +    G E    C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G VDQS+QSFLDD QI +GFVLTC AYP SD  I TH+EE +
Sbjct:   35 FGLKSRSMGRLTCMATYKVTFLDGETGAENVXECSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
The following BLAST results are available for this feature:
BLAST of BQ623284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER_ARCLA6.216e-3473.96Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER1_CYAPA1.060e-3368.37Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER1_DUNSA1.385e-3371.28Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_THAWE1.809e-3370.00Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER3_MAIZE4.029e-3363.89Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_CYACA4.029e-3368.04Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER3_ARATH4.029e-3363.39Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER_BUMFI5.262e-3367.35Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER_APHSA5.262e-3367.71Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_PHYPA6.873e-3360.36Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00375 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623284 ID=BQ623284; Name=BQ623284; organism=Citrus sinensis; type=EST; length=461bp
CCTACAGCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTATATT
TGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACATACA
AAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCCTGAT
GACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTA
CTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTG
GAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGA
GAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTAT
AGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATA
TCTCATTATTATCTTCTCTTTTATGTGTTGGGTTTTGGCTGATTATTTTA
ATGCTTTGAAA
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