BQ623285

Overview
NameBQ623285
Unique NameBQ623285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG--PRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVR 259
            DH+P   +E  R+E  GG V  + G  PR+ G LA +R+ GDQ LK  + S+PDV     +   EF+ILASDGLW V+ N+ A  +V+
Sbjct:  200 DHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVK 287          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGD-QYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            +H P +++E  R++ AGG V      R+LGVL  SRSIGD QY +  V S PD+   + +  D F++LA DGL+ V + E A   +  C            +                 + RGS+DN++V+VV +
Sbjct:  259 EHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKSAADARYEAACNRLANKAVQRGSADNVTVMVVRI 390          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = 2
Query:    5 HKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKP 412
            HKP+R DE +R+EA GG V   +  R+ G LA SR+IGD + KP+V  + D    E +  +++L+LA DG +DVV +     +V     G +          +                RGS DNI+V+VV L  P
Sbjct:  288 HKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHEIPGLVH----GHL-------LRQKGSGMHVAEELVAVARDRGSHDNITVMVVFLRDP 412          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 50/139 (35.97%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRV-INWNGP-RILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRD-EFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNK 409
            DH P R DE +R+E++GG V    NG  R+   LA +RS GD  LK +V+++P+V  T  +    EFL++ASDGLW+ VSN+ A   V             VD   +                RGS D+++V+VV+L +
Sbjct:  271 DHTPARDDERSRIESSGGYVSCGSNGVWRVQDCLAVTRSFGDGGLKRWVVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVDAVAAGHYSVDSCRRLVDMARR----------------RGSRDDVTVMVVDLKR 393          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 44/135 (32.59%), Postives = 66/135 (48.89%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGD-QYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            +H P +++E  R++ AGG V      R+LGVL  SRSIGD QY +  V S PD+   + +  D F++LA DGL+ V + E A   +  C                              + RGS+DN++V+VV +
Sbjct:  259 EHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKPAVDARYEAACNRLANKAVQRGSADNVTVMVVRI 390          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGD-QYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCF-SGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVEL 403
            +H P +++E  R++ AGG V      R+LGVL  SRSIGD QY +  V S PD+   + +  D F++LA DGL+ V + E A   +  C    +I+      A +               + RGS+DN++V+VV +
Sbjct:  259 EHNPTQYEERMRIQKAGGNV---RDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDDKIQTREGKPAVDAR-YEAACNRLANKAVQRGSADNVTVMVVRI 390          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 51/137 (37.23%), Postives = 67/137 (48.91%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLKPFVISKPDVMVTER-SDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNK 409
            DHK    +E  RV   GG ++     RI GVLA +R++GD YLK  V + P    T   +  DEF I+A DGLWDVVS++ A   VR   S R      V+                  + R S+DNI+ IVV L +
Sbjct:  208 DHKGSDANESRRVTQLGGLMVQ---NRINGVLAVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVE----------------FALKRLSTDNITCIVVNLTR 325          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG--PRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVE 400
            DH+P+   E   +E  GG V N+ G  PR+ G LA +R+ GD+ LK  + S+P V V    D  EFLILASDGLW V+SN+ A   ++      IK A +                    ++R SSD+ISV+VV+
Sbjct:  171 DHEPNM--EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAVDSIK-----GIKDAKAA-----------AKHLAEEAVARKSSDDISVVVVK 287          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 48/156 (30.77%), Postives = 77/156 (49.36%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNGPRILGVLATSRSIGDQYLK---------PFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVVELNKPTKFNS*CIIK 442
            DHKP    E  R++ AGG V+     R+ G LA SR++GD   K           V  +P+V    R++ DEF+ILA DG+WDV+SNE  C+ V+     R++ +  ++                  + +GS DN+S+++V  +   K +   + K
Sbjct:  168 DHKPCNPREKERIQNAGGSVMI---QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVK----SRLEVSDDLE--------NVCNWVVDTCLHKGSRDNMSIVLVCFSNAPKVSDEAVKK 308          
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 48/134 (35.82%), Postives = 67/134 (50.00%), Query Frame = 2
Query:    2 DHKPDRHDELTRVEAAGGRVINWNG--PRILGVLATSRSIGDQYLKPFVISKPDVMVTERSDRDEFLILASDGLWDVVSNEAACQVVRRCFSGRIKWASSVDAGNQNPXXXXXXXXXXXXISRGSSDNISVIVV 397
            DH PD   E + +E+ GG V N  G  PR+ G+LA SR  GD+ LK ++ S+P++         +FLILASDG+  V+SN+ A  V +       K     +A  Q              + R S D+IS IVV
Sbjct:  163 DHDPDDDTERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAK-------KLKDPKEAARQ---------VVAEALKRNSKDDISCIVV 280          
The following BLAST results are available for this feature:
BLAST of BQ623285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
P2C44_ORYSJ2.812e-1244.32Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
ILKAP_HUMAN3.673e-1232.59Integrin-linked kinase-associated serine/threonine... [more]
PPM1F_RAT8.182e-1234.56Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
P2C74_ORYSJ8.182e-1235.97Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
ILKAP_RAT8.182e-1232.59Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE1.069e-1133.82Integrin-linked kinase-associated serine/threonine... [more]
PP2C1_SCHPO1.396e-1137.23Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
P2C39_ARATH1.396e-1138.52Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
PPM1B_HUMAN1.823e-1130.77Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
P2C17_ARATH1.823e-1135.82Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00376 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00376 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623285 ID=BQ623285; Name=BQ623285; organism=Citrus sinensis; type=EST; length=632bp
TGATCATAAGCCTGACAGACATGATGAACTGACAAGAGTAGAAGCTGCTG
GAGGAAGGGTCATAAACTGGAACGGCCCCCGAATCTTAGGAGTTCTTGCC
ACCTCCAGATCTATAGGCGATCAATACTTGAAACCATTTGTGATATCAAA
GCCAGATGTGATGGTGACTGAAAGAAGCGACCGCGATGAATTCCTCATAC
TTGCTAGCGATGGCTTATGGGATGTTGTATCAAATGAAGCAGCATGCCAA
GTCGTGAGGAGATGTTTCAGCGGCCGGATAAAATGGGCATCCTCCGTCGA
CGCCGGGAACCAAAACCCCGCTGCCAGAGCAGCAGCAGTGCTGGTCGAGC
TAGCCATCTCTCGGGGCAGCAGTGACAATATAAGCGTCATAGTAGTTGAG
CTAAATAAACCTACCAAGTTTAATTCCTAGTGCATCATAAAATTTAATAA
ACAGCAACAGAAGTTCGTTTTCGAAGATTTTAACCATTGTTTTGTTTAGG
TAGAAACCATGTTTTCAATTCAGAAAATGAACCGAGAGCGGCGGGAGCTC
TGTTGAATTGACGAGCTTTTCAGGGGGATTTGTTGGATGTAACATTTAAT
TCATTTGGTCAACTTTAAATTGTTCTTTTTTT
back to top