BQ623286

Overview
NameBQ623286
Unique NameBQ623286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12372 contig Csv1_Contig12372:549..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.826e-33
Identity = 83/216 (38.43%), Postives = 113/216 (52.31%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTLG-WPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G +++DE +VP  +        Y N + + R+I  TV   L  +P+YL     G+       HF+PY  ++   ER  I IS      M   L  L      + V  +YG P  +   +L  +T L H   H  LP Y   EW + RG L TVDRDYG +  + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  129 YHGWRISHRTHHQNHGHIEKDESWVPLTEKI------YKNLDSMTRLIRFTVPFPLFVYPIYLFSRSPGKE----GSHFNPYSNLFPPSERKGIAISTLCWATMFSLLIYLSFITSPLLVLKLYGIPYWIFVMWLDFVTYLHHHGHHQKLPWYRGKEWSYLRGGLTTVDRDYGWIYNIHHDI-GTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.734e-32
Identity = 79/215 (36.74%), Postives = 112/215 (52.09%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE + P  +         L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  ++ S A   AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  192 YHGWRISHRTHHQNHGHVENDESWHPMSEKIYNT----LDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERKDVLTSTACWTAMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 80/217 (36.87%), Postives = 117/217 (53.92%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLN-NPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQH---THPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G +++DE +VP  +        Y N + + R++  +    +  +P YL     G+       HF+PY  ++S  ER  ++ S      ++  L  L    G +++  +YG P L+   +L  +T L H   TH  LP Y   EW + RG L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK+ K +LG+YY+
Sbjct:  126 YNGWRISHRTHHQNHGHVEKDESWVPLTEKV------YKNLDDMTRMLRYSFPFPIFAYPFYLWNRSPGKE----GSHFNPYSNLFSPGERKGVVTSTLCWGIVLSVLLYLSLTIGPIFMLKLYGVPYLIFVMWLDFVTYLHHHGYTH-KLPWYRGQEWSYLRGGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 79/215 (36.74%), Postives = 112/215 (52.09%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLT-LGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE + P  +       K L+ P  R    T+ L  L +P YL     G+       H+ P   ++  +ER  ++ S A   AM   L CL    G + +  +Y  P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  150 YHGWRISHRTHHQNHGHVENDESWHPMSEKIY----KSLDKPT-RFFRFTLPLVMLAYPFYLWARSPGKK----GSHYHPDSDLFLPKERNDVLTSTACWTAMAVLLVCLNFVMGPMQMLKLYVIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 80/215 (37.21%), Postives = 113/215 (52.56%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE + P  +       K L+N     +T T+  +L +P L   F +  R   +   HF P   ++  +ER  II S A   AM   L  L  + G V +  +YG P  +   +L  +T L H      LP Y    W + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP++G+YY+
Sbjct:  206 YHGWRISHRTHHQNHGHVENDESWHPLSEKIF----KSLDN-----VTKTLRFSLPFPMLAYPFYLWSRSPGKKGSHFHPDSGLFVPKERKDIITSTACWTAMAALLVYLNFSMGPVQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 77/215 (35.81%), Postives = 111/215 (51.63%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTL-GWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH + G  + DE + P  +           + + R++  T    L  +P+YL     G+       HFDP   ++   ER  +I S A   AM+  L  L    G + +  +YG P ++   +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+ G+YY+
Sbjct:  200 YHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSL-----DTVTRMLRFTAPFPLLAFPVYLFSRSPGKT----GSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVMGPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.569e-30
Identity = 76/215 (35.35%), Postives = 109/215 (50.70%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRVITLTVTLTLGWP-LYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE + P  ++      K          T     TL +P L   F +  R   +   H+ P   ++  +E+  ++ S A   AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  185 YHGWRISHRTHHQNHGHVENDESWHPLPESIYKNLEK---------TTQMFRFTLPFPMLAYPFYLWNRSPGKQGSHYHPDSDLFLPKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389          
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.049e-30
Identity = 81/215 (37.67%), Postives = 112/215 (52.09%), Query Frame = 2
Query:    2 YFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGRV-ITLTVTLTLGWPLYLAFNVSGRPYDRFACHFDPYGPIYSDRERLQIIISDAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 637
            Y  W+ SHR HH N G ++ DE + P  +       K L+    ++  TL   L L +P+YL     G+       HF P   ++   E+  +I S     AM+  L  L    G V +  +YG P L    +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  196 YHGWRISHRTHHQNHGHVENDESWHPLSEKIY----KNLDTATKKLRFTLPFPL-LAYPIYLWSRSPGKQ----GSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVIGPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400          
The following BLAST results are available for this feature:
BLAST of BQ623286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_SOYBN9.826e-3338.43Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH3.734e-3236.74Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3E_PHAAU1.086e-3136.87Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA1.086e-3136.74Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_RICCO4.128e-3137.21Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_SOYBN5.392e-3135.81Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3D_ARATH1.569e-3035.35Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN2.049e-3037.67Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00377 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00377 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623286 ID=BQ623286; Name=BQ623286; organism=Citrus sinensis; type=EST; length=686bp
CTACTTCTCTTGGAAGTATAGCCATCGCCGCCATCACTCCAATACAGGAT
CCCTTGATCGTGATGAAGTATTTGTCCCCAAGCAAAAAACCGCCATTGGT
TGGTATGCCAAGTACCTTAACAACCCACTTGGCCGAGTCATAACACTTAC
TGTCACCCTCACCCTTGGCTGGCCTTTGTACCTGGCATTCAATGTATCCG
GTAGGCCTTATGATAGATTTGCTTGCCACTTTGATCCTTATGGCCCCATC
TACTCAGACCGCGAGAGGCTCCAAATTATCATTTCTGATGCTGGAATTTT
AGCTATGATTTACAGTCTCTACTGTCTTGTAGCAGCAAAAGGACTTGTGT
ACGTGTTCTGCATCTATGGAGGACCTTTGCTGGTAGTGAACGGATTTCTC
GTTTTGATCACATTGTTGCAGCACACTCACCCTTCACTGCCACATTACCA
TTCTTCAGAATGGGACTGGTTCCGAGGAGCCCTAGCAACTGTTGATAGAG
ACTATGGGATCTTGAACAAGGTCTTCCATAACATTACTGATACTCATGTA
GCTCACCATTTGTTTTCAACAATGCCACATTATCATGCAATGGAGGCTAC
GAAGGCAATAAAGCCAATTTTGGGAGAATATTATCAGTTCGATGGGACTC
CATTTTATAAGGCAATGTGGAGGGAACAAAGGAGTG
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