BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 54/89 (60.67%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +VVIAYEPVWAIGTGK ATPEQAQEVHA +R  +K+    +VA + RI YGGSV  SN  EL    DIDG L+GGASL   +F  I+ S
Sbjct:  162 SVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKS 250          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHEAM (Triosephosphate isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTS 309
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF T+ +   S
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRRRL-SEVSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLTLCSIAMS 259          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 53/85 (62.35%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            VVIAYEPVWAIGTGKVA+   AQEV  A+R  L      +VA + R++YGGSVN  N  EL  Q D+DG LVGGASLKG EFAT+
Sbjct:  167 VVIAYEPVWAIGTGKVASAADAQEVCGAIRAELAELAGPEVAAQVRVLYGGSVNAKNVGELVAQPDVDGALVGGASLKGDEFATL 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 58/99 (58.59%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKVAEQVIIQYGGSVNASNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SODGM (Triosephosphate isomerase OS=Sodalis glossinidius (strain morsitans) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            +++N VIAYEP+WAIGTGK ATP QAQ VH  +RD +  + +A +A +  I YGGSVN +N AEL  Q DIDG LVGGASLK   FA IV +    K
Sbjct:  158 AFENTVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKHDAA-IAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAAEAK 253          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 57/99 (57.58%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLT31.771e-2260.67Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_SHEAM2.313e-2255.79Triosephosphate isomerase OS=Shewanella amazonensi... [more]
TPIS_NOCFA2.313e-2262.35Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_ENTCL2.313e-2258.59Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_SODGM3.021e-2256.70Triosephosphate isomerase OS=Sodalis glossinidius ... [more]
TPIS_SALTY3.021e-2257.58Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALTI3.021e-2257.58Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]
TPIS_SALSV3.021e-2257.58Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK3.021e-2257.58Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB3.021e-2257.58Triosephosphate isomerase OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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