BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_RHOSR (Triosephosphate isomerase OS=Rhodococcus sp. (strain RHA1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 53/85 (62.35%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            VVIAYEPVWAIGTG+VA+   AQEV AA+R  L    S DVA+  R++YGGSVN  N  E+  Q D+DG LVGGASLK  EFAT+
Sbjct:  167 VVIAYEPVWAIGTGRVASAANAQEVCAAIRATLGELASQDVASGVRVLYGGSVNAKNVGEIVGQTDVDGALVGGASLKADEFATL 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 57/98 (58.16%), Postives = 65/98 (66.33%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            ++ VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A +A +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  159 FEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKKA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIN (Triosephosphate isomerase OS=Haemophilus influenzae GN=tpiA PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +  + K
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAK 262          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIG (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittGG) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +  + K
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAK 262          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_HAEIE (Triosephosphate isomerase OS=Haemophilus influenzae (strain PittEE) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +  + K
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAK 262          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_HAEI8 (Triosephosphate isomerase OS=Haemophilus influenzae (strain 86-028NP) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +  + K
Sbjct:  165 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAAAK 262          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.946e-22
Identity = 58/99 (58.59%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            ++  VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFKGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKK-DATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKAAAAAKKA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_PASMU (Triosephosphate isomerase OS=Pasteurella multocida GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.153e-22
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +    +A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +    K
Sbjct:  165 AFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAKKDNA-VAEQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAAKAK 260          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPY (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPS (Triosephosphate isomerase OS=Yersinia pseudotuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_RHOSR3.946e-2262.35Triosephosphate isomerase OS=Rhodococcus sp. (stra... [more]
TPIS_KLEPN3.946e-2258.16Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_HAEIN3.946e-2256.57Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIG3.946e-2256.57Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEIE3.946e-2256.57Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_HAEI83.946e-2256.57Triosephosphate isomerase OS=Haemophilus influenza... [more]
TPIS_ERWT93.946e-2258.59Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_PASMU5.153e-2257.73Triosephosphate isomerase OS=Pasteurella multocida... [more]
TPIS_YERPY6.731e-2255.45Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPS6.731e-2255.45Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
back to top