BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPP (Triosephosphate isomerase OS=Yersinia pestis (strain Pestoides F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPN (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPG (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPE (Triosephosphate isomerase OS=Yersinia pestis GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPB (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERPA (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YERP3 (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/101 (55.45%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            + +++  VIAYEP+WAIGTGK ATP QAQ VH  +RD +    +A VA +  I YGGSVN  N AEL  Q DIDG LVGGASLK   FA IV +    K A
Sbjct:  156 VKAFEGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAKQDAA-VAAQVIIQYGGSVNDKNAAELFTQPDIDGALVGGASLKADAFAVIVKAAAKAKKA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHELP (Triosephosphate isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTS 309
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++ +   S
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSLCSIAMS 259
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHEDO (Triosephosphate isomerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_PSEMY (Triosephosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            + + +N V+AYEPVWAIGTG  ATPEQAQEVHAA+R  +   + A VA++ RI+YGGSV  ++ AEL   +DIDG LVGGASL   EF  I
Sbjct:  156 VQALNNAVVAYEPVWAIGTGLTATPEQAQEVHAAIRAQVA-QLDAQVASELRILYGGSVKAASAAELFGMQDIDGGLVGGASLNADEFGAI 245
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_YERPP6.731e-2255.45Triosephosphate isomerase OS=Yersinia pestis (stra... [more]
TPIS_YERPN6.731e-2255.45Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPG6.731e-2255.45Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPE6.731e-2255.45Triosephosphate isomerase OS=Yersinia pestis GN=tp... [more]
TPIS_YERPB6.731e-2255.45Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPA6.731e-2255.45Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERP36.731e-2255.45Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_SHELP6.731e-2254.74Triosephosphate isomerase OS=Shewanella loihica (s... [more]
TPIS_SHEDO6.731e-2257.30Triosephosphate isomerase OS=Shewanella denitrific... [more]
TPIS_PSEMY6.731e-2258.24Triosephosphate isomerase OS=Pseudomonas mendocina... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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