BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +    K
Sbjct:  158 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +    K
Sbjct:  158 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.731e-22
Identity = 56/99 (56.57%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + +++  VIAYEP+WAIGTGK ATP QAQ VHA +R  +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK P FA IV +    K
Sbjct:  158 VEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAKSQA-VADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAEKAK 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHESW (Triosephosphate isomerase OS=Shewanella sp. (strain W3-18-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPC (Triosephosphate isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHEON (Triosephosphate isomerase OS=Shewanella oneidensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSL 253
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB9 (Triosephosphate isomerase OS=Shewanella baltica (strain OS195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.790e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++DN +IAYEP+WA+GTGK ATPEQAQEVHA +R  L + VS  +    RI+YGGSV  SN A+L  Q D+DG L+GGASL   EF ++
Sbjct:  166 AFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRL-SEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ACTPJ6.731e-2256.57Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP76.731e-2256.57Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP26.731e-2256.57Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_SHESW8.790e-2257.30Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESR8.790e-2257.30Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM8.790e-2257.30Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA8.790e-2257.30Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEPC8.790e-2257.30Triosephosphate isomerase OS=Shewanella putrefacie... [more]
TPIS_SHEON8.790e-2257.30Triosephosphate isomerase OS=Shewanella oneidensis... [more]
TPIS_SHEB98.790e-2257.30Triosephosphate isomerase OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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