BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 1
Query:    1 KAYADAIP--SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 312
            KA  +AI   +W N+++AYEPVWAIGTGK ATP+QAQEVH  +R W+  N+S +VA  TRI YGGSVN +NC ELAK+ DIDGFLVGGASL   +F TI+NSV+ K
Sbjct:  155 KAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 260          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:  148 AYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            AYA  I  W NVV+AYEPVWAIGTGK ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:  148 AYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.466e-32
Identity = 68/100 (68.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            K  AD +  W  VV+AYEPVWAIGTGK A+PEQAQEVH  LR WL+ NVS  VA   RIIYGGSV G NC ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  148 KVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLK-PEFVDIINA 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.206e-32
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            K  AD +  W  VV+AYEPVWAIGTGK A+P+QAQEVH  LR WLK NVS  VA   RIIYGGSV G  C ELA Q+D+DGFLVGGASLK PEF  I+N+
Sbjct:  148 KFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLK-PEFIDIINA 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 5.493e-32
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            A AD + +W  +VIAYEPVWAIGTGK ATPEQAQEVHA +R W  N + A VA   R+IYGGSVNG NC E  K  DIDGFLVGGASLK PEF  IVN
Sbjct:  149 AIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLK-PEFHNIVN 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.174e-32
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            AYA  I  W NVV+AYEPVWAIGTG+ ATP+QAQEVHA LR WL +N+S +V+   RI YGGSV  +N  ELAK+ DIDGFLVGGASLK PEF  I+N+
Sbjct:  148 AYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINA 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.650e-31
Identity = 66/91 (72.53%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            W  VVIAYEPVWAIGTGKVAT EQAQEVH+A+R WLK+ +SA+ A  TRIIYGGSV+  NC +LAK+ DIDGFLVGGASLK P F  IVN+
Sbjct:  158 WAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLK-PAFVDIVNA 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.073e-31
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   10 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            A+ +  W+ VV+AYEPVWAIGTGK ATPEQAQEVH  LR W + N+S +V+   RIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  I+N+
Sbjct:  151 AENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLK-PEFIDIINA 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 7.932e-31
Identity = 65/100 (65.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            K  AD +  W+ VV+AYEPVWAIGTGK ATP+QAQEVH  LR WLK +V   VA  TRIIYGGSV G+ C ELA Q D+DGF V GASLK PEF  I+N+
Sbjct:  149 KVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLK-PEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ENTHI1.888e-3263.21Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_DROYA2.466e-3267.68Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI2.466e-3267.68Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPISA_DANRE2.466e-3268.00Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPISB_DANRE4.206e-3267.00Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_SCHPO5.493e-3268.37Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_DROME7.174e-3266.67Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_EMENI4.650e-3172.53Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_ORYLA6.073e-3164.95Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_PIG7.932e-3165.00Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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