BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_FRAT1 (Triosephosphate isomerase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            VVIAYEPVWAIGTG VA+ EQ QE H  +R  L   V   +A   +I+YGGS+   N  ++    D+DG L+GGASLK  EF  I+N
Sbjct:  160 VVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAK-VDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIIN 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BACME (Triosephosphate isomerase OS=Bacillus megaterium GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 46/87 (52.87%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            VIAYEP+WAIGTGK +T E A EV A +R  +    S DVA   RI YGGSV  +N  E   Q DIDG LVGGASL+   F  ++ +
Sbjct:  163 VIAYEPIWAIGTGKSSTAEGANEVCAYIRSVVAEQFSQDVADAVRIQYGGSVKPANIKEYMSQSDIDGALVGGASLEADSFLQLLEA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBFM (Triosephosphate isomerase OS=Vibrio fischeri (strain MJ11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + + +  +IAYEP+WAIGTGK AT E AQ +HA +R  +    S +VA    I YGGSV   N A    Q DIDG LVGGA+L    FA I  +    K
Sbjct:  158 VDALNGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEEVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBF1 (Triosephosphate isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 46/99 (46.46%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + + +  +IAYEP+WAIGTGK AT E AQ +HA +R  +    S +VA    I YGGSV   N A    Q DIDG LVGGA+L    FA I  +    K
Sbjct:  158 VDALNGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEEVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBCH (Triosephosphate isomerase OS=Vibrio cholerae GN=tpiA PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 48/104 (46.15%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   10 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            A  + + +  +IAYEP+WAIGTGK AT + AQ +HA++R  +     A VA +  I YGGSV   N A    Q DIDG LVGGASL    FA I  +    K A
Sbjct:  155 AYGVEALNGAIIAYEPIWAIGTGKAATADDAQRIHASIRALIAAK-DAAVAEQVIIQYGGSVKPENAASYFAQPDIDGALVGGASLDAKGFAAIAKAAAEAKKA 257          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCV (Triosephosphate isomerase OS=Chlamydophila caviae GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 45/94 (47.87%), Postives = 57/94 (60.64%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +P    V+IAYEPVWAIGTGKVA+    QEVHA  R+ L    S + +    I+YGGSV   N    A+  D+DG LVGGASL    FA ++ +
Sbjct:  158 LPETAPVIIAYEPVWAIGTGKVASTADVQEVHAFCREVLSRIFSKEKSEIISILYGGSVKADNAEGFARCPDVDGLLVGGASLDPQGFANVLRN 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGE (Triosephosphate isomerase OS=Mycoplasma genitalium GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEF 282
            N+VIAYEP+WAIGTGK ATPE A +    +R+++ +    +VA    I+YGGSV+ +N  +LA  E IDGFLVG ASL+   F
Sbjct:  154 NLVIAYEPLWAIGTGKTATPEVANQTIKTIREYINDLYDENVANNISILYGGSVDHNNIQKLAIMEQIDGFLVGKASLEIKNF 236          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_HERA2 (Triosephosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 49/86 (56.98%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            VVIAYEPVWAIGTG  ATP  AQ +HA +R  L        A    I YGGSV   N  EL  Q DIDG LVGGASLK  +F  IV
Sbjct:  162 VVIAYEPVWAIGTGDTATPADAQAMHARIRAELAALSDQATADAVIIQYGGSVKPDNVDELMAQPDIDGALVGGASLKAADFIRIV 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVY (Triosephosphate isomerase OS=Vibrio vulnificus (strain YJ016) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   10 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            A  + + +  +IAYEP+WAIGTGK AT E AQ +HA++R  +     A VA +  I YGGSV   N      Q DIDG LVGGASL    FA I  +    K
Sbjct:  155 AYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRAMIAAK-DAAVAEQVIIQYGGSVKPENAEAYFAQPDIDGALVGGASLDAKSFAAIAKAAAKMK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVU (Triosephosphate isomerase OS=Vibrio vulnificus GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = 1
Query:   10 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            A  + + +  +IAYEP+WAIGTGK AT E AQ +HA++R  +     A VA +  I YGGSV   N      Q DIDG LVGGASL    FA I  +    K
Sbjct:  155 AYGVEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRAMIAAK-DAAVAEQVIIQYGGSVKPENAEAYFAQPDIDGALVGGASLDAKSFAAIAKAAAKMK 255          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FRAT14.991e-1751.72Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_BACME4.991e-1752.87Triosephosphate isomerase OS=Bacillus megaterium G... [more]
TPIS_VIBFM6.519e-1746.46Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_VIBF16.519e-1746.46Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_VIBCH6.519e-1746.15Triosephosphate isomerase OS=Vibrio cholerae GN=tp... [more]
TPIS_CHLCV6.519e-1747.87Triosephosphate isomerase OS=Chlamydophila caviae ... [more]
TPIS_MYCGE8.514e-1751.81Triosephosphate isomerase OS=Mycoplasma genitalium... [more]
TPIS_HERA28.514e-1756.98Triosephosphate isomerase OS=Herpetosiphon auranti... [more]
TPIS_VIBVY1.112e-1646.08Triosephosphate isomerase OS=Vibrio vulnificus (st... [more]
TPIS_VIBVU1.112e-1646.08Triosephosphate isomerase OS=Vibrio vulnificus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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