BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.036e-30
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    4 AYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            A A  +PS   WD VVIAYEPVWAIGTGK ATP QAQEVH  +RDW++ +V A +A K RI+YGGSV  SN  +L  Q D+DGFLVGGASLK P+F TI+N+
Sbjct:  148 AIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLK-PDFITIINA 248          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.770e-30
Identity = 62/106 (58.49%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 KAYADAIPS-WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            K +A   P  W  +VIAYEPVWAIGTG VATP++AQ+ H  +R W+   VS DVA KT I+YGGSVN  NC  L+KQ DIDGFLVGGASL   +F  I+ S   KK
Sbjct:  151 KDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.496e-29
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 1
Query:   10 ADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEF 282
            AD +  W  VV+AYEPVWAIGTGK A+P+Q+QE+H  LR WLK NVS  VA   RIIYGGSV G+ C ELA + D+DGFLVGGASLK PEF
Sbjct:  150 ADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLK-PEF 239          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 66/101 (65.35%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 KAYADAI-PSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            KA   AI   W+N+V+AYEPVWAIGTGK ATP+QAQ+VH ALR+WL  NVS  V+   RI YGGSV  +N  ELA  +DIDGFLVGGASLK PEF  IVN+
Sbjct:  147 KALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK-PEFVEIVNA 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.954e-29
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            W  VVIAYEPVWAIGTGKVAT +QAQEVHAA+R WL + +S + +  TRIIYGGSV+  NC ELA++ D+DGFLVGGASLK P F  I+N+
Sbjct:  160 WSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLK-PAFVDIINA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.552e-29
Identity = 67/100 (67.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 KAYADAIPS---WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            KA A+ I S   W  VV+AYEPVWAIGTGKVATP+QAQEVH  LR W K N    V  K RIIYGGSV  +NC ELA+Q D+DGFLVGGASLK PEF  I
Sbjct:  149 KAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLK-PEFTEI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.333e-29
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +W+ VV+AYEPVWAIGTGKVATPEQAQEVH  LR W+  N+  DVA K RI+YGGSVN +N A L  + DI+GFLVGGASLK PEF  I+++
Sbjct:  159 AWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLK-PEFRDIIDA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 7.424e-29
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            W+ VVIAYEP+WAIGTGKVAT EQAQEVHA++R WL   +S + A   R+IYGGSV  +NC +LA Q D+DGFLVGGASLK P F  I+N+
Sbjct:  158 WNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLK-PAFVDIINA 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 9.696e-29
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +A  D   SW+N+VIAYEPVWAIGTGK A+ EQAQEVH  +R +LK  VS  VA  TRIIYGGSV   N AEL K+ DIDGFLVGGASLK P+F  I+N+
Sbjct:  147 QAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK-PDFVKIINA 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.654e-28
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            W  VVIAYEPVWAIGTGKVATP+QAQE HA +R W+ + + ADVA + RI+YGGSVNG N   L +Q D++GFLVGGASLK PEF  I+ +
Sbjct:  159 WAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIKA 248          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_TAESO1.036e-3063.73Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_DICDI8.770e-3058.49Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_LATCH1.496e-2967.03Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_BOMMO1.954e-2965.35Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_ASPOR1.954e-2967.03Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_SCHMA2.552e-2967.00Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_LEIME3.333e-2966.30Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_PARBA7.424e-2964.84Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_CAEEL9.696e-2965.00Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_TRYBB1.654e-2864.84Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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