BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + + +  +IAYEP+WAIGTGK AT E AQ +HA++R  +     A VA +  I YGGSV   N      Q DIDG LVGGASL    FA I  +  + K
Sbjct:  158 VEALNGAIIAYEPIWAIGTGKAATAEDAQRIHASIRALIAAKDEA-VAAQVIIQYGGSVKPENAEAYFSQPDIDGALVGGASLDAKSFAAIAKAAAAAK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBMA (Triosephosphate isomerase OS=Vibrio marinus GN=tpiA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 46/99 (46.46%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + + +  +IAYEP+WAIGTGK AT E AQ +HA +R  +     A VA    I YGGSV   N A    Q DIDG LVGGA+L    FA I  +    K
Sbjct:  158 VEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSEA-VAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAAAEAK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STAAB (Triosephosphate isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            +VVIAYEP+WAIGTGK +T E A E+   +R  + +  S +V+  TRI YGGSV  +N  E   Q DIDG LVGGASLK  +F  ++
Sbjct:  163 SVVIAYEPIWAIGTGKSSTSEDANEMCTFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLL 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            S   VV AYEP+WAIGTGK A+PE AQ+    +R  L+       A + R++YGGS+   N +E+  Q+D+DG LVGGASL+   F  +V +
Sbjct:  162 SGGRVVFAYEPIWAIGTGKTASPEDAQDAIGRIRGLLRELRGEGFAEEARLLYGGSIKPENISEIMAQKDVDGGLVGGASLEVGSFLQLVEA 253          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBP (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL-KNNVSAD-VATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLK 270
            N+VIAYEPVWAIGTGKVATP +A+E HA +R  + K  V AD VA   +I+YGGSV   N  EL  + +IDG LVGGAS K
Sbjct:  160 NLVIAYEPVWAIGTGKVATPVEAEEAHAFIRKEIGKLFVGADLVAENIQILYGGSVKPDNIKELLAKPNIDGGLVGGASQK 240          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBA (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWL-KNNVSAD-VATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLK 270
            N+VIAYEPVWAIGTGKVATP +A+E HA +R  + K  V AD VA   +I+YGGSV   N  EL  + +IDG LVGGAS K
Sbjct:  160 NLVIAYEPVWAIGTGKVATPVEAEEAHAFIRKEIGKLFVGADLVAENIQILYGGSVKPDNIKELLAKPNIDGGLVGGASQK 240          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_FRATN (Triosephosphate isomerase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            VVIAYEPVWAIGTG VA+ +Q QE H  +R  L   V   +A   +I+YGGS+   N  ++    D+DG L+GGASLK  EF  I+N
Sbjct:  160 VVIAYEPVWAIGTGVVASLDQIQETHQFIRSLLAK-VDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKAAEFNEIIN 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_AGRT5 (Triosephosphate isomerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N VIAYEPVWAIGTG   T +  +E HA +RD L      D     RI+YGGSV  +N  EL   E++DG L+GGASLK  +F +I
Sbjct:  162 ENTVIAYEPVWAIGTGLTPTTQDVREAHAFMRDELVKRFG-DAGKTMRILYGGSVKPANALELMGVENVDGALIGGASLKAADFLSI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 47/90 (52.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            + +VIAYEPVWAIGTG  A  E A EV   +R  +      +V+ K RI YGGSVN  N  E   Q +IDG LVGGASLK   F  IV S
Sbjct:  160 EKIVIAYEPVWAIGTGHSAKGEDANEVAKLIRRIISEIYDEEVSQKVRIQYGGSVNPQNIKEFLAQSEIDGALVGGASLKPQSFWDIVRS 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_XANFL (Triosephosphate isomerase OS=Xanthobacter flavus GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 44/90 (48.89%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            ++VIAYEP+WAIGTG+  T +   EVH A+R  L     A+ A   RI+YGGSV   N A L    ++DG LVGGASLK  +F  I  +V
Sbjct:  160 SLVIAYEPIWAIGTGRTPTTDDVAEVHGAIRHILAERFGAE-ANGIRILYGGSVKPDNAAALLATANVDGALVGGASLKAADFLAIARAV 248          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_VIBPA1.112e-1646.46Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_VIBMA1.112e-1646.46Triosephosphate isomerase OS=Vibrio marinus GN=tpi... [more]
TPIS_STAAB1.112e-1651.72Triosephosphate isomerase OS=Staphylococcus aureus... [more]
TPIS_RUBXD1.112e-1645.65Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_LEPBP1.112e-1660.49Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_LEPBA1.112e-1660.49Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_FRATN1.112e-1650.57Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_AGRT51.112e-1650.57Triosephosphate isomerase OS=Agrobacterium tumefac... [more]
TPIS_DICTD1.452e-1652.22Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_XANFL1.897e-1648.89Triosephosphate isomerase OS=Xanthobacter flavus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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