BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STREM (Triosephosphate isomerase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            ++V+AYEP+WAIGTGK AT E AQ +  A+RD +  +   +VA K R+ YGGSV   N  E     D+DG LVGGASL+   F  +++ V
Sbjct:  162 SLVLAYEPIWAIGTGKSATQEDAQSMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENIKEYMACPDVDGALVGGASLEADSFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            ++VIAYEP+WAIGTGK AT + AQ +  A+RD +  +    VA K R+ YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            ++VIAYEP+WAIGTGK AT + AQ +  A+RD +  +    VA K R+ YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            ++VIAYEP+WAIGTGK AT + AQ +  A+RD +  +    VA K R+ YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  162 SLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LYSSC (Triosephosphate isomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTS 309
            +++VIAYEP+WAIGTGK AT + A +V  A+R  ++    A  A   RI YGGSV   N  EL  +E IDG LVGGASL+   + T++ +  +
Sbjct:  160 EHMVIAYEPIWAIGTGKTATADDANQVCGAIRSVVEELFDAATANAVRIQYGGSVKPDNVHELLSKEHIDGALVGGASLQPESYLTLLEAAAN 252          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_FRATM (Triosephosphate isomerase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            VVIAYEPVWAIGTG VA+ EQ QE H  +R  L   V   +A   +I+YGGS+   N  ++    ++DG L+GGASLK  EF  I+N
Sbjct:  160 VVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLA-KVDEKLAKNIKIVYGGSLKAENAKDILSLPNVDGGLIGGASLKAVEFNEIIN 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ALISL (Triosephosphate isomerase OS=Aliivibrio salmonicida (strain LFI1238) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 45/99 (45.45%), Postives = 56/99 (56.57%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            + + +  +IAYEP+WAIGTGK AT E AQ +HA +R  +    S +VA    I YGGSV   N      Q DIDG LVGGA+L    FA I  +    K
Sbjct:  158 VEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEK-SEEVAKNVVIQYGGSVKPENAEAYFAQPDIDGALVGGAALDAKSFAAIAKAAAKAK 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_RHOPB (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            N V+AYEPVWAIGTG+  T    ++VH  +R  L   +S +  +K RI+YGGSV  SN  EL    D++G LVGGASLK  +F  I
Sbjct:  168 NTVVAYEPVWAIGTGRTPTVADVEQVHGFIRKSLTQRMSGE-GSKVRILYGGSVKPSNAQELMAVADVNGALVGGASLKAGDFLAI 252          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA*CINLF 342
            + ++IAYEPVWAIGTGK A+P++A +    +R+ + N  SA V    +I+YGGSV+ +N   + +Q +IDG LVG ASL+  +F     +    K+++ C   F
Sbjct:  163 EKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAAV--KLSSNCCQHF 264          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 47/87 (54.02%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            VV+AYEPVWAIGTGKVATPEQ  E H  + + LK    A       I+YGGSV   N A L KQ  ++GFLVGGASL+   F+ I +
Sbjct:  158 VVVAYEPVWAIGTGKVATPEQVAETHTDVFNILK----ALGFETAPILYGGSVKPDNAAGLIKQPHVNGFLVGGASLEAKSFSEIAS 240          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STREM1.897e-1647.78Triosephosphate isomerase OS=Streptococcus equi su... [more]
TPIS_STRA51.897e-1648.89Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA31.897e-1648.89Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA11.897e-1648.89Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_LYSSC1.897e-1646.24Triosephosphate isomerase OS=Lysinibacillus sphaer... [more]
TPIS_FRATM1.897e-1650.57Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_ALISL1.897e-1645.45Triosephosphate isomerase OS=Aliivibrio salmonicid... [more]
TPIS_RHOPB2.477e-1650.00Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_PHYAS2.477e-1640.38Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_BDEBA2.477e-1654.02Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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