BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRTD (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRT2 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tpiA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R++YGGSV   N AE     D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +IAYEPVWAIGTGKVA+ + AQ++H A+R  L      DVA+   I+YGGSV   N  EL    DIDG LVGGASL   +F  I
Sbjct:  167 LIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLAE-FDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLNPQDFLAI 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_POLNS (Triosephosphate isomerase OS=Polynucleobacter necessarius (strain STIR1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +IAYEPVWAIGTGKVA+ + AQ++H A+R  L    + DVA+   I+YGGSV   N  EL    DIDG LVGGASL   +F  I
Sbjct:  167 LIAYEPVWAIGTGKVASAQVAQDMHRAIRLQLAE-FNEDVASHVGILYGGSVKPDNAVELFAMPDIDGGLVGGASLSPQDFLAI 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LACDL (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. lactis GN=tpiA PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            +VIAYEP+WAIGTGK A+ +QA+E+   +R+ +K+  + + A   RI YGGSV  +N  EL  + +IDG LVGGASL    +  +VN
Sbjct:  163 LVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANIKELMAKPNIDGGLVGGASLVPDSYLALVN 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LACDE (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            +VIAYEP+WAIGTGK A+ +QA+E+   +R+ +K+  + + A   RI YGGSV  +N  EL  + +IDG LVGGASL    +  +VN
Sbjct:  163 LVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLVPDSYLALVN 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LACDB (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            +VIAYEP+WAIGTGK A+ +QA+E+   +R+ +K+  + + A   RI YGGSV  +N  EL  + +IDG LVGGASL    +  +VN
Sbjct:  163 LVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLVPDSYLALVN 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LACDA (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            +VIAYEP+WAIGTGK A+ +QA+E+   +R+ +K+  + + A   RI YGGSV  +N  EL  + +IDG LVGGASL    +  +VN
Sbjct:  163 LVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMAKPNIDGGLVGGASLVPDSYLALVN 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEIRA (Triosephosphate isomerase OS=Deinococcus radiodurans GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            +VV+AYEPVWAIGTGK AT + A+E+ AA+R  L+    A  A   R++YGGSV   N AE+  + +++G LVGGASLK P+   +++++
Sbjct:  155 DVVVAYEPVWAIGTGKTATADDAEELAAAIRGALREQYGAR-AEGIRVLYGGSVKPENIAEICGKPNVNGALVGGASLKVPDVLGMLDAL 243          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRTD3.235e-1647.73Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT23.235e-1647.73Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT13.235e-1647.73Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_POLSQ3.235e-1654.76Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_POLNS3.235e-1654.76Triosephosphate isomerase OS=Polynucleobacter nece... [more]
TPIS_LACDL3.235e-1648.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDE3.235e-1648.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDB3.235e-1648.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDA3.235e-1648.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_DEIRA3.235e-1647.78Triosephosphate isomerase OS=Deinococcus radiodura... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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