BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEHE1 (Triosephosphate isomerase OS=Dehalococcoides ethenogenes (strain 195) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +A A   PS  +++IAYEP+WAIGTGK AT  +A    + +R  L +      +  T I+YGGSVN  N AEL  Q DIDG LVGGASLK   F +I
Sbjct:  148 EALAGINPS--SIIIAYEPIWAIGTGKAATAAEANNTISYIRKVLGDIWGNTASRITPILYGGSVNEKNTAELLCQSDIDGALVGGASLKAESFVSI 242          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            D  VIAYEPVWAIGT + ATPEQA+  H+ +R+ +   +    A   RIIYGGSVN  N A+L    DIDG L+G  SL   +F  I
Sbjct:  160 DQAVIAYEPVWAIGTNRTATPEQARAAHSFIRERIA-AMHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSLDADDFERI 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BARBK (Triosephosphate isomerase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 43/88 (48.86%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            N VIAYEP WAIGTGK  T E   +VH  +R  + +    D   K R++YGGSV  SN +EL +   ++G L+GGASLK  +F TI N
Sbjct:  163 NTVIAYEPRWAIGTGKTPTSEDIAQVHGFIRKEVSHRFG-DEGHKIRLLYGGSVKPSNASELLETSHVNGALIGGASLKATDFLTICN 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTS 309
            +N V+AYEPVWAIGTGKV T +Q  EVH ALR  L     A       ++YGGSV   N AE+    ++DG LVGGASLK  +F  I+ ++ +
Sbjct:  154 ENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLKAADFGPIIAALAA 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            VVIAYEP+WAIGTGK +T E A  V   +R  + N  S + A   RI YGGSV   N A    +E IDG LVGGASL+   F  +V +
Sbjct:  162 VVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHIDGALVGGASLQPQSFLQLVEA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAD (Triosephosphate isomerase OS=Acinetobacter sp. (strain ADP1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.519e-16
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +VIAYEP+WAIGTG+ A+PE AQ +HA +R+ L     A   ++  ++YGGSV   N  ELA   DI+G LVGGASL    F  I  +
Sbjct:  174 IVIAYEPIWAIGTGRTASPEDAQAIHAKIREGLCQITPA--GSQIALLYGGSVKPENAVELAACPDINGALVGGASLNAESFYKIAQA 259          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_NEIMB (Triosephosphate isomerase OS=Neisseria meningitidis serogroup B GN=tpiA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            N+ +AYEPVWAIGTGKVAT EQ  ++HA +   + +   +DV  K R++YGGSV   N A++     +DG LVGGASL    F  I+++
Sbjct:  161 NIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDV--KIRVLYGGSVKADNAADIFAVPYVDGALVGGASLSYDSFTAIISA 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_NEIMA (Triosephosphate isomerase OS=Neisseria meningitidis serogroup A GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            N+ +AYEPVWAIGTGKVAT EQ  ++HA +   + +   +DV  K R++YGGSV   N A++     +DG LVGGASL    F  I+++
Sbjct:  161 NIAVAYEPVWAIGTGKVATVEQIADMHAFIYKEILSLCGSDV--KIRVLYGGSVKADNAADIFAVPYVDGALVGGASLSYDSFTAIISA 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_EXIS2 (Triosephosphate isomerase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            N+V+AYEPVWAIGTGK AT + AQ+    +RD +      + A   RI YGGSV   N  E   Q DIDG LVGGASL+   F  ++ ++
Sbjct:  161 NLVVAYEPVWAIGTGKSATEQDAQDSCKFVRDVIAAEFGTEAAEAVRIQYGGSVKPDNIKEYMAQPDIDGALVGGASLETGSFLKLLEAI 250          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DINSH (Triosephosphate isomerase OS=Dinoroseobacter shibae (strain DFL 12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            N+V+AYEPVWAIGTG+V + +Q  EVH  +R  L+      V    R++YGGSV     AE+    ++DG LVGGASLK  +F  I+
Sbjct:  157 NLVVAYEPVWAIGTGRVPSVDQIGEVHDFIRARLEQRFGEGVGRSVRLLYGGSVKPGIAAEIFAVSNVDGALVGGASLKAADFTGII 243          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DEHE13.235e-1649.48Triosephosphate isomerase OS=Dehalococcoides ethen... [more]
TPIS_METFK4.226e-1650.57Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_BARBK4.226e-1648.86Triosephosphate isomerase OS=Bartonella bacillifor... [more]
TPIS_SILST5.519e-1648.39Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_ANOFW5.519e-1650.00Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_ACIAD5.519e-1648.86Triosephosphate isomerase OS=Acinetobacter sp. (st... [more]
TPIS_NEIMB7.208e-1647.19Triosephosphate isomerase OS=Neisseria meningitidi... [more]
TPIS_NEIMA7.208e-1647.19Triosephosphate isomerase OS=Neisseria meningitidi... [more]
TPIS_EXIS27.208e-1647.78Triosephosphate isomerase OS=Exiguobacterium sibir... [more]
TPIS_DINSH7.208e-1647.13Triosephosphate isomerase OS=Dinoroseobacter shiba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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