BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_CLOK5 (Triosephosphate isomerase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            + +VIAYEP+WAIGTGK AT +QA +  A +R  +      + A   RI YGGSV  +      +Q  IDG LVGGASLK  +FA IVN
Sbjct:  159 EKIVIAYEPIWAIGTGKTATDKQANDTIAHIRGVVSKMYGENAAEVVRIQYGGSVKPATIKAQMEQPHIDGALVGGASLKPQDFAAIVN 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STAS1 (Triosephosphate isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            +VIAYEP+WAIGTGK +T + A E+ A +R  +    S  VA  TRI YGGSV  +N  E   + DIDG LVGGASLK  +F  ++
Sbjct:  164 LVIAYEPIWAIGTGKSSTAKDANEMCAFVRQTVAELSSQTVADATRIQYGGSVKPNNIKEYMAESDIDGALVGGASLKVDDFVQLL 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            V++AYEP+WAIGTGK ATPEQAQ+V   +R     N++        I+YGGSV+  N  +L  Q DI+G LVGGASLK   F  ++
Sbjct:  162 VIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVDSFIKLL 239          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BARHE (Triosephosphate isomerase OS=Bartonella henselae GN=tpiA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N++IAYEPVWA+GTG  AT     EVHA +   + +    D   K R++YGGSV  SN  EL     ++G L+GGASLK  +F TI
Sbjct:  162 ENIIIAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFG-DEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGASLKAIDFLTI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N VIAYEPVWAIGTG   T    +E HA +R  L +   A+   K RI+YGGSV  SN  EL    ++DG L+GGASLK  +F  I
Sbjct:  162 ENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGSVKPSNAKELMGVANVDGALIGGASLKADDFLAI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUSU (Triosephosphate isomerase 1 OS=Brucella suis GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N +IAYEPVWAIGTG   T +  +  HA +R+ L     A  A   R++YGGSV  SN AEL    D+DG LVGGASLK  +F  I
Sbjct:  162 ENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAKGA-HLRLLYGGSVKPSNAAELLGVADVDGALVGGASLKAADFLAI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS1_BRUAB (Triosephosphate isomerase 1 OS=Brucella abortus GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N +IAYEPVWAIGTG   T +  +  HA +R+ L     A  A   R++YGGSV  SN AEL    D+DG LVGGASLK  +F  I
Sbjct:  162 ENTIIAYEPVWAIGTGLTPTVQDVRAAHAFMREQLIERFGAKGA-HLRLLYGGSVKPSNAAELLGVADVDGALVGGASLKAADFLAI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEIGD (Triosephosphate isomerase OS=Deinococcus geothermalis (strain DSM 11300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASL 267
            +N+++AYEPVWAIGTGK AT + A+E+ AA+R+ L    +A+ A   RI+YGGSV   N A +  Q +++G LVGGASL
Sbjct:  154 ENLIVAYEPVWAIGTGKTATADDAEELAAAIREALAGLYTAE-ARSFRILYGGSVKPDNIASICAQPNVNGALVGGASL 231          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSC (Triosephosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++IAYEP+WAIGTGK AT  +A      +R  L + +    A  + I+YGGSVN  N  E+  Q +IDG LVGGASLK   F +I
Sbjct:  158 IIIAYEPIWAIGTGKAATASEANSAIGYIRRVLGDTLGNAAAQTSPILYGGSVNEKNITEILSQTNIDGALVGGASLKAESFVSI 242          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSB (Triosephosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            ++IAYEP+WAIGTGK AT  +A      +R  L + +    A  + I+YGGSVN  N  E+  Q +IDG LVGGASLK   F +I
Sbjct:  158 IIIAYEPIWAIGTGKAATASEANSAIGYIRRVLGDTLGNAAAQTSPILYGGSVNEKNITEILSQTNIDGALVGGASLKAESFVSI 242          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CLOK57.208e-1649.44Triosephosphate isomerase OS=Clostridium kluyveri ... [more]
TPIS_STAS19.413e-1651.16Triosephosphate isomerase OS=Staphylococcus saprop... [more]
TPIS_MYCHR9.413e-1650.00Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_BARHE9.413e-1647.13Triosephosphate isomerase OS=Bartonella henselae G... [more]
TPIS1_RHIME9.413e-1650.57Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS1_BRUSU9.413e-1650.57Triosephosphate isomerase 1 OS=Brucella suis GN=tp... [more]
TPIS1_BRUAB9.413e-1650.57Triosephosphate isomerase 1 OS=Brucella abortus GN... [more]
TPIS_DEIGD1.229e-1551.90Triosephosphate isomerase OS=Deinococcus geotherma... [more]
TPIS_DEHSC1.229e-1548.24Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_DEHSB1.229e-1548.24Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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