BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            ++V+AYEP+WAIGTGK AT + AQ +  A+RD +  +   +VA K R+ YGGSV   N  +     D+DG LVGGASL+   F  +++
Sbjct:  162 SLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEADSFLALLD 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N V+AYEPVWAIGTG   T    ++VH  +RD L      + A   RI+YGGSV  SN  EL    +++G LVGGASLK  +F  I
Sbjct:  163 ENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGEGAA-VRILYGGSVKPSNAKELMAVPEVNGALVGGASLKAADFLAI 248          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DESVM (Triosephosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   13 DAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            DA+P+   + +AYEPVWAIGTGKVA P +  E HA +R  L      +     RI+YGGSV   N  E+   +++DG LVGGASL+   F+ I+
Sbjct:  159 DAVPA--AIAVAYEPVWAIGTGKVAGPPEIVEAHALVRQLLVARF-GEGGVAVRILYGGSVKPENAREIIALDNVDGVLVGGASLQADSFSRII 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BUCCC (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Cinara cedri GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 41/90 (45.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            ++DN +IAYEP+W+IG+G  A P++ Q +   +R+++K+  + ++     I YGGSV  +N  EL  Q+DIDGFLVGGASL+  EF+ I+
Sbjct:  161 AFDNSIIAYEPIWSIGSGNSAAPKEVQCIAHFIRNYVKSKSNHNIENFF-IQYGGSVTKNNAKELIYQKDIDGFLVGGASLQLEEFSKII 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BACSU (Triosephosphate isomerase OS=Bacillus subtilis GN=tpiA PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            VIAYEP+WAIGTGK +T + A +V A +R  +  + S + A K RI YGGSV  +N  E   + DIDG LVGGASL+   F  ++
Sbjct:  163 VIAYEPIWAIGTGKSSTAKDANDVCAHIRKTVAESFSQEAADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLL 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 44/87 (50.57%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            VIAYEP+WAIGTGK AT + A E  A +R  +  N S + A   RI YGGSV   N  +   Q DIDG LVGGASL    F  +V +
Sbjct:  163 VIAYEPIWAIGTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGSVKPGNIKDYMAQPDIDGALVGGASLDADSFLELVGA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            ++V+AYEP+WAIGTGK AT + AQ +  A+RD +  +   +VA K R+ YGGSV   N  +     D+DG LVGGASL+   F  +++
Sbjct:  162 SLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAGSFLALLD 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            ++V+AYEP+WAIGTGK AT + AQ +  A+RD +  +   +VA K R+ YGGSV   N  +     D+DG LVGGASL+   F  +++
Sbjct:  162 SLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAGSFLALLD 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            + VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  162 STVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 324
            N++IAYEPVWAIGTGK ATP+ A +V   +RD +    S+  +   RIIYGGSV+ +N   + +Q  IDG L G ASL+  +F       + + +A+
Sbjct:  164 NIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTEDFLFFAQIASKQALAS 260          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRP11.606e-1545.45Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_RHOP51.606e-1548.28Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_DESVM1.606e-1545.74Triosephosphate isomerase OS=Desulfovibrio vulgari... [more]
TPIS_BUCCC1.606e-1545.56Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_BACSU1.606e-1549.41Triosephosphate isomerase OS=Bacillus subtilis GN=... [more]
TPIS_BACSK1.606e-1550.57Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_STRPG2.097e-1545.45Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP62.097e-1545.45Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRGC2.097e-1545.56Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_ONYPE2.097e-1543.30Triosephosphate isomerase OS=Onion yellows phytopl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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