BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK ++ E A EV A +R  +   VS   A   RI YGGSV   N  E   Q DIDG LVGGASL+   F  ++ +V
Sbjct:  163 VIAYEPIWAIGTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPGNIKEYMAQPDIDGALVGGASLEPASFLGLLEAV 250          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BACA2 (Triosephosphate isomerase OS=Bacillus amyloliquefaciens (strain FZB42) GN=tpiA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            VIAYEP+WAIGTGK +T + A +V A +R  +  + S + A K RI YGGSV  +N  E   + DIDG LVGGASL+   F  ++
Sbjct:  163 VIAYEPIWAIGTGKSSTAKDANDVCAHIRKVVAESFSQETADKLRIQYGGSVKPANIKEYMAESDIDGALVGGASLEPQSFVQLL 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            D V IAYEPVWAIGTGK A+PE A  +H+++R  L        A    I YGGS+   N A L K+ +IDG L+GGA LK   F  I
Sbjct:  159 DKVTIAYEPVWAIGTGKNASPEDADAIHSSIRKTLAALYGEKAAKNMIIQYGGSMKPENAAGLLKKHNIDGGLIGGAGLKTETFLPI 245          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            +N+VIAYEP+WAIGTG+    ++A  V   +R  L N        +  I+YGGSV   N  EL  Q +IDG LVGGASL   EFA IVN
Sbjct:  162 ENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIVN 243          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            VIAYEP+WAIGTGK A+ + AQ++   +RD +  +   +VA K R+ YGGSV   N A      D+DG LVGGASL+   F  +++ V
Sbjct:  164 VIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFV 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BART1 (Triosephosphate isomerase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.739e-15
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   31 DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +N +IAYEPVWAIGTG  AT E   +VH  +RD + +    D   K R++YGGSV  S+  EL     ++G L+GGASLK  +F TI
Sbjct:  162 ENTIIAYEPVWAIGTGNTATSEDIAKVHYFIRDKICSRF-GDEGNKIRLLYGGSVKPSSAFELLSIPHVNGALIGGASLKAIDFLTI 247          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACCN2.097e-1551.14Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_BACA22.097e-1549.41Triosephosphate isomerase OS=Bacillus amyloliquefa... [more]
TPIS_TREDE2.739e-1549.43Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_SYNJB2.739e-1549.44Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_STRR62.739e-1546.59Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN2.739e-1546.59Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI2.739e-1546.59Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP42.739e-1546.59Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP22.739e-1546.59Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_BART12.739e-1548.28Triosephosphate isomerase OS=Bartonella tribocorum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
back to top