BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJA (Triosephosphate isomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 49/96 (51.04%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   16 AIPSWD--NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            A+P  D  N+VIAYEP+WAIGTGK     +A  V   +R  L        A    I+YGGSV  SN  EL  Q  IDG LVGGASL   EFA IVN
Sbjct:  155 ALPGIDLRNLVIAYEPIWAIGTGKTCAAAEANRVIGLIRQHLG-------ADHLPILYGGSVKASNIDELMAQPQIDGVLVGGASLDPQEFARIVN 243          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +++IAYEPVWAIGTGK A+ + AQ+  A +R  L    S  +A +  I+YGGSV   N +EL  Q+DI+G LVGGASL   +F  ++ +
Sbjct:  163 DLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +VIAYEPVWAIGTGKVA+ +     H  +R  L N +  + +   RI+YGGSVN  N + + + ++++G LVGGASL+   F  I+++
Sbjct:  162 LVIAYEPVWAIGTGKVASQQDIITAHTLIRKILHNMIG-NTSQNIRILYGGSVNSENASSILELDNVNGLLVGGASLQAESFMKIIHA 248          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_BRASB (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tpiA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            N+ +AYEPVWAIGTG   T +  +++HA +R  L    + + A + RI+YGGSV  SN AEL    +++G LVGGASLK  +F  I
Sbjct:  163 NLTVAYEPVWAIGTGLTPTAKDVEQIHAFIRTLLIERFNGEGA-RMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SYMTH (Triosephosphate isomerase OS=Symbiobacterium thermophilum GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 45/86 (52.33%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   34 NVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            N+VIAYEPVWAIGTG+   P  AQ   AA+R  +      + A + RI YGGSV   N A    Q DIDG LVGGASL    FA I
Sbjct:  161 NLVIAYEPVWAIGTGRNCDPGDAQARIAAVRAVVAEAFGPEAAARVRIQYGGSVKPENMAAYMAQPDIDGALVGGASLDPTSFAAI 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRII-YGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIV 294
            +V+AYEP+WAIGTGKVAT E AQ++   +R          + +K  II YGGSV+ SN   L KQEDIDG LVGGASL+   F  ++
Sbjct:  165 IVVAYEPIWAIGTGKVATAEVAQQICKFIRS---------ITSKDLIIQYGGSVSPSNIENLMKQEDIDGALVGGASLEVDSFFELI 242          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MORSP (Triosephosphate isomerase OS=Moraxella sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   13 DAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKV 318
            DA+P+   ++IAYEPVWAIGTGKV T  +    H  ++  L     AD  +   ++YGGSVN  N    A    IDG LVGGASLK   F TI  + +   +
Sbjct:  172 DALPT--RLIIAYEPVWAIGTGKVPTVAEVSATHKHIKQTLAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATAFSQASI 269          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_GEOKA (Triosephosphate isomerase OS=Geobacillus kaustophilus GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 46/101 (45.54%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 KAYADAIPSW-DNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            KA A   P      VIAYEP+WAIGTGK +TPE A  V   +R  +      + A   RI YGGSV   N  +   QE IDG LVGGASL+   F  +V +
Sbjct:  149 KALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQEQIDGALVGGASLEPASFLQLVEA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPN (Triosephosphate isomerase OS=Chlamydia pneumoniae GN=tpiA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +IAYEPVWAIGTGKVA     Q++H   R+ +    S   A +  I+YGGSV   N     +  D+DG LVGGASL+G  F  +  +
Sbjct:  165 LIAYEPVWAIGTGKVAEASDVQDIHMFCREVVAERFSEATAEEISILYGGSVKVDNAQRFGQCSDVDGLLVGGASLEGQSFFEVAKN 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFT (Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tpiA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +IAYEPVWAIGTG+ A P Q Q +HA +R  +     A +     I+YGG +   N AEL  Q+D+DG L+GGASL   +F  I  +
Sbjct:  162 LIAYEPVWAIGTGRHADPSQVQAMHAFIRGEIARQ-DARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASLVADDFLAIARA 247          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SYNJA3.577e-1551.04Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_MYCGA3.577e-1547.19Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_LAWIP3.577e-1544.32Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_BRASB3.577e-1547.67Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_SYMTH4.672e-1552.33Triosephosphate isomerase OS=Symbiobacterium therm... [more]
TPIS_MYCPU4.672e-1551.72Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_MORSP4.672e-1543.14Triosephosphate isomerase OS=Moraxella sp. GN=tpiA... [more]
TPIS_GEOKA4.672e-1545.54Triosephosphate isomerase OS=Geobacillus kaustophi... [more]
TPIS_CHLPN4.672e-1544.83Triosephosphate isomerase OS=Chlamydia pneumoniae ... [more]
TPIS_XYLFT6.102e-1545.98Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
back to top