BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.160e-28
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            W N+VIAYEPVWAIGTGKVAT  QAQE H  +R +L   VS  VA++TR+IYGGSVN +N  +LA Q+DIDGFLVGGASLK PEF  I+N+
Sbjct:  159 WSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLK-PEFVDIINA 248          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            A A  +  W  +V+AYEPVWAIGTG  ATPE AQE H A+R+ L  ++ AD A KTRI+YGGSVNG N  E   + D+DGFLVGGASLK PEF  I+ S
Sbjct:  149 AVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFLVGGASLK-PEFVDIIKS 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.685e-28
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVN 297
            W+NVVIAYEPVW+IGTG VATPEQA+EVH  LR W    V A+ A   RIIYGGS NGSNC +L +  +IDGFLVGGASLK PEF T+++
Sbjct:  162 WENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLK-PEFTTMID 250          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.812e-28
Identity = 61/92 (66.30%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   16 AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            +I  W  VV+AYEPVWAIGTGKVA+P QAQEVH  LR W K N  + V  + RIIYGGSV  +NC ELA+Q D+DGFLVGGASLK PEF  I
Sbjct:  157 SIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLK-PEFIDI 247          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 1
Query:   28 WDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKK 315
            W  VVIAYEPVW+IGTG VATPEQA+EVH  LR W    V A+ A   RIIYGGS NGSNC +L +  +IDGFLVGGASLK PEF T+++ +T  +
Sbjct:  162 WKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLK-PEFMTMIDILTKTR 256          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   13 DAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            + +  W NVVIAYEPVWAIGTG  AT E AQ++HAA+RD+L    S DVA   RI++GGS NG+N A    + D+DGFLVGGASLK PEF  I+NS
Sbjct:  152 EKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLK-PEFVDIINS 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.388e-27
Identity = 58/100 (58.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            K  AD +  W  V++AY+PVWA GTGK ATP+QAQEVH  LR WLK+N+S  VA  T IIYGGSV  + C ELA Q D+  FL+ G SLK PEF  I+N+
Sbjct:  130 KVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGWLKSNISDAVAQSTGIIYGGSVTKATCKELASQPDVAAFLMSGVSLK-PEFVDIINA 228          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.321e-27
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    1 KAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +A  D +  W NVVIAYEPVWAIGTG  ATPE AQE+H ++R++L   +    A +TRI+YGGS NG N      + D+DGFLVGGASLK PEF  I+NS
Sbjct:  148 QAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFLVGGASLK-PEFVDIINS 246          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            +W  VVIAYEPVWAIGTGKVATP+QAQEVH  LR W+++ +  D+A + RI+YGGSV   N   L +  DI+GFLVGGASLK PEF  I+ +
Sbjct:  159 AWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLK-PEFVEIIEA 249          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.449e-26
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 1
Query:    4 AYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNS 300
            A  + +  W NVV+AYEPVWAIGTG  ATPE AQ++HA++R +L + +    A++ RI+YGGS NGSN      + D+DGFLVGGASLK PEF  I+NS
Sbjct:  149 AVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-PEFVDIINS 246          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COPC72.160e-2867.03Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_DEBHA3.685e-2859.60Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPI2_GIALA3.685e-2866.67Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_SCHJA4.812e-2866.30Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPI1_GIALA1.400e-2762.50Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_ASHGO2.388e-2760.42Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPISL_HUMAN2.388e-2758.00Putative triosephosphate isomerase-like protein LO... [more]
TPIS_ZYGBA5.321e-2757.00Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_TRYCR1.548e-2660.87Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_YEAST3.449e-2655.56Triosephosphate isomerase OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
back to top