BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHISS (Triosephosphate isomerase OS=Shigella sonnei (strain Ss046) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHIFL (Triosephosphate isomerase OS=Shigella flexneri GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHIF8 (Triosephosphate isomerase OS=Shigella flexneri serotype 5b (strain 8401) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHIDS (Triosephosphate isomerase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHIBS (Triosephosphate isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_SHIB3 (Triosephosphate isomerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ESCF3 (Triosephosphate isomerase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOUT (Triosephosphate isomerase OS=Escherichia coli (strain UTI89 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSM (Triosephosphate isomerase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOSE (Triosephosphate isomerase OS=Escherichia coli (strain SE11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHISS6.087e-2358.59Triosephosphate isomerase OS=Shigella sonnei (stra... [more]
TPIS_SHIFL6.087e-2358.59Triosephosphate isomerase OS=Shigella flexneri GN=... [more]
TPIS_SHIF86.087e-2358.59Triosephosphate isomerase OS=Shigella flexneri ser... [more]
TPIS_SHIDS6.087e-2358.59Triosephosphate isomerase OS=Shigella dysenteriae ... [more]
TPIS_SHIBS6.087e-2358.59Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_SHIB36.087e-2358.59Triosephosphate isomerase OS=Shigella boydii serot... [more]
TPIS_ESCF36.087e-2358.59Triosephosphate isomerase OS=Escherichia fergusoni... [more]
TPIS_ECOUT6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSM6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOSE6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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