BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLU (Triosephosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLI (Triosephosphate isomerase OS=Escherichia coli (strain K12) GN=tpiA PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOLC (Triosephosphate isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL6 (Triosephosphate isomerase OS=Escherichia coli O6 GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOL5 (Triosephosphate isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOK1 (Triosephosphate isomerase OS=Escherichia coli O1:K1 / APEC GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECOHS (Triosephosphate isomerase OS=Escherichia coli O9:H4 (strain HS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECODH (Triosephosphate isomerase OS=Escherichia coli (strain K12 / DH10B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO8A (Triosephosphate isomerase OS=Escherichia coli O8 (strain IAI1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
[Close]
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO7I (Triosephosphate isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECOLU6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O17:... [more]
TPIS_ECOLI6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOLC6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECOL66.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O6 G... [more]
TPIS_ECOL56.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O6:K... [more]
TPIS_ECOK16.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O1:K... [more]
TPIS_ECOHS6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O9:H... [more]
TPIS_ECODH6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli (str... [more]
TPIS_ECO8A6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O8 (... [more]
TPIS_ECO7I6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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