BQ623287

Overview
NameBQ623287
Unique NameBQ623287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12296 contig Csv1_Contig12296:240..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO5E (Triosephosphate isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO57 (Triosephosphate isomerase OS=Escherichia coli O157:H7 GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO45 (Triosephosphate isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ECO24 (Triosephosphate isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 58/99 (58.59%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++  VIAYEPVWAIGTGK ATP QAQ VH  +RD +   V A++A +  I YGGSVN SN AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-VDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   40 VIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            VIAYEPVWAIGTG+VA+   AQEV  A+RD L N  SADVA   R++YGGSVN  N  E+  Q D+DG LVGGASL G +FAT+
Sbjct:  168 VIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGEQFATL 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_FLAPJ (Triosephosphate isomerase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSV 303
            +W N+++AYEPVWAIGTG+ A+PEQAQE+H  +R+ ++    +D+A    I+YGGSV   N  E+  + D+DG L+GGA+LK  +F  IVN +
Sbjct:  158 AWANIILAYEPVWAIGTGETASPEQAQEMHEFIRETVRKVFGSDIAEDVSILYGGSVKPDNAKEIFSKPDVDGGLIGGAALKADDFVVIVNGI 250          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   19 IPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTS 309
            I S +N VI YEPVWAIGTGK ATPE AQE+ A +R WL     A VA K +I+YGGSV  +N AEL  Q DIDG LVGGASL   EF+ +++  ++
Sbjct:  156 ITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSVKPANSAELFGQADIDGGLVGGASLDAVEFSKVISGASA 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPA (Triosephosphate isomerase OS=Mycobacterium paratuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            VVIAYEPVWAIGTG+VA+   AQEV AA+R  L +  SA +A   R++YGGSVN  N  EL  Q+DIDG LVGGASL G +FAT+
Sbjct:  167 VVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGEQFATL 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   37 VVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATI 291
            VVIAYEPVWAIGTG+VA+   AQEV AA+R  L +  SA +A   R++YGGSVN  N  EL  Q+DIDG LVGGASL G +FAT+
Sbjct:  167 VVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGEQFATL 251          
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.771e-22
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   25 SWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 321
            +++ VVIAYEPVWAIGTGK ATP QAQ VH  +RD +     A VA +  I YGGSVN +N AEL  Q DIDG LVGGASLK   FA IV +  + K A
Sbjct:  158 AFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAK-ADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAEAAKQA 255          
The following BLAST results are available for this feature:
BLAST of BQ623287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ECO5E6.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO576.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O157... [more]
TPIS_ECO456.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O45:... [more]
TPIS_ECO246.087e-2358.59Triosephosphate isomerase OS=Escherichia coli O139... [more]
TPIS_MYCGI1.356e-2263.10Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_FLAPJ1.356e-2248.39Triosephosphate isomerase OS=Flavobacterium psychr... [more]
TPIS_VIBSA1.771e-2256.70Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_MYCPA1.771e-2262.35Triosephosphate isomerase OS=Mycobacterium paratub... [more]
TPIS_MYCA11.771e-2262.35Triosephosphate isomerase OS=Mycobacterium avium (... [more]
TPIS_ENT381.771e-2258.59Triosephosphate isomerase OS=Enterobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623287 ID=BQ623287; Name=BQ623287; organism=Citrus sinensis; type=EST; length=557bp
AAAGCCTATGCAGATGCTATACCCAGTTGGGATAATGTAGTCATTGCATA
TGAGCCTGTATGGGCTATTGGAACTGGTAAAGTGGCCACCCCCGAGCAGG
CTCAGGAAGTACATGCTGCTCTTCGTGATTGGCTTAAAAACAATGTCTCA
GCAGACGTTGCCACTAAAACACGTATTATCTATGGAGGGTCAGTAAATGG
AAGCAATTGTGCTGAACTTGCAAAACAAGAGGATATTGATGGTTTTCTGG
TTGGTGGCGCTTCCTTGAAGGGCCCAGAGTTTGCTACCATTGTCAATTCC
GTAACATCCAAGAAAGTAGCTGCTTGATGTATAAACCTGTTCTGTCAAGA
TCAACCAATAATAATGGGCTAAGAGAATCTATATCAGTTTAAAGCTAATT
AGTGTAACCAGCCTATGCCCTTGCTATGTTCAATGAAAGTTTTGATAGTT
TATTTATTTGTTTCTCCTTCCCCAAACAATCGGAGATTCCTTCTGTTTCT
CTATCGTGGGCTGAACTTGTTTGATACCGGACAGGAGAACAATATACAGG
TATGTTG
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