BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XYLF2 (Iron--sulfur cluster insertion protein erpA OS=Xylella fastidiosa (strain M23) GN=erpA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA+   DD  +E DG V++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEENNADLALRVYIQGGGCSGFQYGFEFDENRAD---DDLALETDGVVLLVDPLSLQYLLGAEVDYTESLTGAKFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_HAEIN (Iron-binding protein iscA OS=Haemophilus influenzae GN=iscA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.227e-18
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            I LTE A + +      R + + LR+GVK  GCSG++Y +EF +  N+  +D V E  G  I+ DPKSL++L G++LDY    +  GF + NPN  ++CGCG+SF
Sbjct:    3 ITLTEKAAQRVKAFLDNRGKGIGLRLGVKTSGCSGLAYVLEFVDVLNS--EDQVFEQYGVNIIVDPKSLVYLNGIELDYVKEGLNEGFKYNNPNVKESCGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: YUTM_BACSU (Uncharacterized protein yutM OS=Bacillus subtilis GN=yutM PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLC-LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            + +TE A  H+  M  E  E+   LR+GVK GGCSG+SY M FE+  +    DSV +  G  ++ D +SL  + G  +DY  +++GGGF   NPNA  +CGCG SF
Sbjct:    5 VTITEAAALHIKDMMKEHEEENAFLRVGVKGGGCSGLSYGMGFEHEKSE--SDSVFDQHGITVLVDKESLDIMNGTVIDYKQSMLGGGFTIDNPNAIASCGCGSSF 108          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA1_DICDI (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  157 KPAILLTENALKHLNKMRSERSEDLC--LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAAE 489
            K    +T++ALK + ++ +++  D C  LR+G+K+ GCSGMSYT++F  + N + D++V+      I+ D K+LL + G ++DY +  I   F F NPNAT TCGCG+SF  +
Sbjct:   15 KAIFSMTDSALKRVKEIMNDKKIDNCIGLRLGIKERGCSGMSYTLDFATQKN-KFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPIKKEFIFINPNATNTCGCGESFTTK 126          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_THIDA (Putative iron-sulfur cluster insertion protein erpA OS=Thiobacillus denitrificans (strain ATCC 25259) GN=erpA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.570e-18
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            T E++  ++ T++A   +  +  E    DL LR+ V  GGCSG  Y   F+   NA  DD+V+  +G  ++ D  S  +L G ++DYS+ L G  F  KNPNAT TCGCG SF+A
Sbjct:    4 TTEMESPLVFTDSAASKVKSLIDEEGNPDLKLRVFVSGGGCSGFQYGFTFDEAQNA--DDTVMVKNGVTLLVDSMSFQYLVGAEIDYSEGLEGAQFVIKNPNATTTCGCGSSFSA 116          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_PHOLL (Iron-binding protein iscA OS=Photorhabdus luminescens subsp. laumondii GN=iscA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I LTE+A + ++   S R + + LR+GV+  GCSGM+Y +EF +  N   DD+V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISLTESAAQRVSSFLSHRGKGVGLRLGVRTSGCSGMAYLLEFADMINE--DDTVFEDKGVKVIVDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_SHEDO (Iron-sulfur cluster insertion protein erpA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=erpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T+   P       A+K    +  E++ +L LR+ V  GGCSG  Y   F+ +++A  DD VIE  G  +V DP SL +L G ++DY+  L G  F+ KNPNA+ TCGCG SF+
Sbjct:    5 TDAAMPIKFTDAAAIKVKGLLEEEQNPELKLRVYVTGGGCSGFQYGFTFDEKSSA--DDFVIEKQGVKLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNASSTCGCGASFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_ACIF5 (Iron--sulfur cluster insertion protein erpA OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=erpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  148 EELKPAILLTENAL-KHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            + + P + LT+NA  K  + +  E S+DL LR+ V  GGCSG  Y   F+   N    D+ +   G  ++ DP S  +L G ++DYS+ L G  F  KNPNAT TCGCG SF+A
Sbjct:   13 DSIPPVMTLTQNAADKIASLIEEEGSDDLKLRVFVTGGGCSGFQYGFTFDENMNE--GDTEVHQLGVSLLIDPMSYQYLVGAEIDYSEGLEGAQFVIKNPNATTTCGCGSSFSA 124          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_ACIF2 (Iron--sulfur cluster insertion protein erpA OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=erpA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  148 EELKPAILLTENAL-KHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            + + P + LT+NA  K  + +  E S+DL LR+ V  GGCSG  Y   F+   N    D+ +   G  ++ DP S  +L G ++DYS+ L G  F  KNPNAT TCGCG SF+A
Sbjct:   13 DSIPPVMTLTQNAADKIASLIEEEGSDDLKLRVFVTGGGCSGFQYGFTFDENMNE--GDTEVHQLGVSLLIDPMSYQYLVGAEIDYSEGLEGAQFVIKNPNATTTCGCGSSFSA 124          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: Y1857_AQUAE (Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.089e-18
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  172 LTENALKHLNKMRSERS-EDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            +T+ A++ + K+  E + E+  LRI V  GGCSG  Y M F++       D V EYDG  +V DP S+ ++ G +LDY    +GGGF  +NPNAT +CGCG SF+
Sbjct:   12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDD--TVEEGDHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFS 114          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ERPA_XYLF25.507e-1946.53Iron--sulfur cluster insertion protein erpA OS=Xyl... [more]
ISCA_HAEIN1.227e-1842.86Iron-binding protein iscA OS=Haemophilus influenza... [more]
YUTM_BACSU1.602e-1843.40Uncharacterized protein yutM OS=Bacillus subtilis ... [more]
ISCA1_DICDI1.602e-1840.71Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ERPA_THIDA3.570e-1840.87Putative iron-sulfur cluster insertion protein erp... [more]
ISCA_PHOLL4.662e-1841.51Iron-binding protein iscA OS=Photorhabdus luminesc... [more]
ERPA_SHEDO4.662e-1841.59Iron-sulfur cluster insertion protein erpA OS=Shew... [more]
ERPA_ACIF54.662e-1842.11Iron--sulfur cluster insertion protein erpA OS=Aci... [more]
ERPA_ACIF24.662e-1842.11Iron--sulfur cluster insertion protein erpA OS=Aci... [more]
Y1857_AQUAE6.089e-1843.81Protein aq_1857 OS=Aquifex aeolicus GN=aq_1857 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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