BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_STRMK (Iron--sulfur cluster insertion protein erpA OS=Stenotrophomonas maltophilia (strain K279a) GN=erpA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.039e-17
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKM-RSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            + L+  +  TE+A   +  + + E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  ++  G  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   19 QSLERPLNFTESAAAKVKSLIQEEGNPDLALRVYIEGGGCSGFQYGFEFDENRAE---DDLAVQTSGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 129          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANC5 (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=erpA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANAC (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas axonopodis pv. citri GN=erpA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANOR (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas oryzae pv. oryzae GN=erpA PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVVTDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANOM (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=erpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + DL LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNADLALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVVTDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_STRM5 (Iron--sulfur cluster insertion protein erpA OS=Stenotrophomonas maltophilia (strain R551-3) GN=erpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            + L+  +  TE+A   +  +  E    DL LR+ ++ GGCSG  Y  EF ENRA    DD  ++  G  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   19 QSLERPLNFTESAAAKVKSLIQEEGNLDLALRVYIEGGGCSGFQYGFEFDENRAE---DDLAVQTSGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 129          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_ALHEH (Iron-sulfur cluster insertion protein erpA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=erpA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            TE+ +  ++    A +    +  E S+DL LR+ V  GGCSG  Y   F+ R      DSV+E DG   + DP S  +L G ++D+ + + G  F  +NPNAT TCGCG SF+
Sbjct:   11 TEDFQALVVTDSAAARVAQLIAQEESDDLKLRVFVSGGGCSGFQYGFTFDERIEE--GDSVVEKDGVTFLVDPMSSQYLMGAEIDFVEGIEGEQFVIRNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_ENTS8 (Iron-binding protein iscA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L++ A   +N   + R +   LR+GV+  GCSGM+Y +EF +    +P+D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDTAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDAP--QPEDTVFEDKGVKVVVDGKSLQFLNGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_EDWI9 (Iron-binding protein iscA OS=Edwardsiella ictaluri (strain 93-146) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 44/106 (41.51%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A K +    + R + L LR+GVK  GCSGM+Y +EF +  N   DD V E  G  ++ D KSL++L G +LD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITMSDSAAKRVQTFLTNRGKGLGLRLGVKTSGCSGMAYVLEFVDVLNE--DDVVFEDQGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVKNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_AZOSE (Putative iron-sulfur cluster insertion protein erpA OS=Azoarcus sp. (strain EbN1) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            A+K    +  E + +L LR+ V  GGCSG  Y   F+   N   DD+  E +G  ++ DP S  +L G ++DYS+ L G  F  +NPNAT TCGCG SF+A
Sbjct:   18 AMKVKELIEEEGNPELKLRVFVSGGGCSGFQYGFTFDEEVNE--DDTAFEKNGVTLLVDPMSYQYLVGAEIDYSEGLEGSQFVIRNPNATSTCGCGSSFSA 116          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ERPA_STRMK1.039e-1740.35Iron--sulfur cluster insertion protein erpA OS=Ste... [more]
ERPA_XANC51.356e-1744.55Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANAC1.356e-1744.55Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANOR1.772e-1744.55Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANOM1.772e-1744.55Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_STRM51.772e-1740.35Iron--sulfur cluster insertion protein erpA OS=Ste... [more]
ERPA_ALHEH1.772e-1738.94Iron-sulfur cluster insertion protein erpA OS=Alka... [more]
ISCA_ENTS83.022e-1742.45Iron-binding protein iscA OS=Enterobacter sakazaki... [more]
ISCA_EDWI93.022e-1741.51Iron-binding protein iscA OS=Edwardsiella ictaluri... [more]
ERPA_AZOSE3.022e-1742.57Putative iron-sulfur cluster insertion protein erp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
back to top