BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA2_HUMAN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGF-YFKNPNATQTCGCGKSFAAEM 492
            I LT++ ++ L ++ +E SE   LR+ V+ GGCSG  Y    +   N  PDD V E  G  +V D  SL F+ G Q+D+S  LI   F    NP A Q C CG SF+ ++
Sbjct:   50 IRLTDSCVQRLLEI-TEGSE--FLRLQVEGGGCSGFQYKFSLDTVIN--PDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL 154          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: Y1755_BRAJA (Uncharacterized protein blr1755 OS=Bradyrhizobium japonicum GN=blr1755 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  235 LRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            LR+ ++ GGC+G  Y M   +    +PDD+VI+ DG  +  D KS   L G  +D+  A    GF F NPNA   C CGKSF
Sbjct:   26 LRVMIEAGGCNGFKYKMGIADEP--KPDDTVIDCDGLKVFVDSKSREHLAGTTIDFVLAPESSGFTFHNPNAATNCSCGKSF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: Y063_RICPR (Uncharacterized protein RP063 OS=Rickettsia prowazekii GN=RP063 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/107 (33.64%), Postives = 54/107 (50.47%), Query Frame = 1
Query:  166 ILLTENALKHLNKM-RSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            I +T+ A + + ++   E+ ++L LR+ V  GGCSG+ Y  E  ++ N   DD V       I+ D  S  F+    LD+ + L    F   NP A   CGCG SF+
Sbjct:    3 ITITDRAFERIYELIELEKDKNLVLRVSVDSGGCSGLMYNYELVSKDNIEKDDYVFTRHNATIIIDSISQKFMLNCTLDFIEELGSSYFNVSNPQAKAKCGCGNSFS 109          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISAM3_ARATH (Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 35/108 (32.41%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  157 KPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            K  + L++ A   + ++   + +   LR+ V+  GC+G+SY + +         D V+E  G  I+ DPK+++ + G ++D+ D  +   F F NPNAT+ CGCG+SF
Sbjct:    3 KQVLALSDTAAARIRQLLQHQQKPF-LRLAVEAKGCNGLSYVLNYAQEKGKF--DEVVEEKGVKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNATK-CGCGESF 106          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA2_BOVIN (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGF-YFKNPNATQTCGCGKSFAAEM 492
            I LT++ ++ L ++ +E SE   LR+ V+ GGCSG  Y    +   N  PDD V E  G  +V D  SL F+ G  +D+S  LI   F    NP A Q C CG SF+ ++
Sbjct:   48 IHLTDSCVQRLLEI-TEGSE--FLRLEVEGGGCSGFQYKFSLDTVIN--PDDRVFEKGGARVVVDSDSLAFVKGAHVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSVKL 152          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ISCA2_HUMAN1.112e-1140.00Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]
Y1755_BRAJA1.453e-1142.68Uncharacterized protein blr1755 OS=Bradyrhizobium ... [more]
Y063_RICPR1.897e-1133.64Uncharacterized protein RP063 OS=Rickettsia prowaz... [more]
ISAM3_ARATH2.478e-1132.41Iron-sulfur assembly protein IscA-like 3, mitochon... [more]
ISCA2_BOVIN5.520e-1139.09Iron-sulfur cluster assembly 2 homolog, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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