BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALDC (Iron-binding protein iscA OS=Salmonella dublin (strain CT_02021853) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALCH (Iron-binding protein iscA OS=Salmonella choleraesuis GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALAR (Iron-binding protein iscA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SALA4 (Iron-binding protein iscA OS=Salmonella agona (strain SL483) GN=iscA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTA--EDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANCP (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANCB (Iron--sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris (strain B100) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_XANC8 (Iron-sulfur cluster insertion protein erpA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEF-ENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A K    ++ E + +L LR+ ++ GGCSG  Y  EF ENRA    DD  +  DG  ++ DP SL +L G ++DY+++L G  F  +NPNA  TCGCG SF+
Sbjct:   30 AAKVRELIQEEGNAELALRVYIQGGGCSGFQYGFEFDENRAE---DDLAVATDGVTLLVDPLSLQYLMGAEVDYTESLTGAQFVIRNPNAKTTCGCGSSFS 127          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_CHRVO (Putative iron-sulfur cluster insertion protein erpA OS=Chromobacterium violaceum GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 47/112 (41.96%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  151 ELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            E+   I  TE+A   +  + +E    DL LR+ V  GGCSG  Y   F+  AN   DD+ IE  G   + DP S  +L G ++DY ++L G  F  +NPNAT TCGCG SF+
Sbjct:    7 EMPSPINFTESACAKVQDLIAEEGNPDLKLRVFVTGGGCSGFQYGFTFDEIANE--DDTAIERQGVTFLVDPMSYQYLVGAEIDYQESLEGSQFVIRNPNATTTCGCGSSFS 116          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURTA (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURPS (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ISCA_SALDC3.947e-1742.45Iron-binding protein iscA OS=Salmonella dublin (st... [more]
ISCA_SALCH3.947e-1742.45Iron-binding protein iscA OS=Salmonella choleraesu... [more]
ISCA_SALAR3.947e-1742.45Iron-binding protein iscA OS=Salmonella arizonae (... [more]
ISCA_SALA43.947e-1742.45Iron-binding protein iscA OS=Salmonella agona (str... [more]
ERPA_XANCP3.947e-1743.56Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_XANCB3.947e-1743.56Iron--sulfur cluster insertion protein erpA OS=Xan... [more]
ERPA_XANC83.947e-1743.56Iron-sulfur cluster insertion protein erpA OS=Xant... [more]
ERPA_CHRVO3.947e-1741.96Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURTA3.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURPS3.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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