BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURP6 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 668) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURP1 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 1710b) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURP0 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia pseudomallei (strain 1106a) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURMS (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain SAVP1) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURMA (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURM9 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain NCTC 10229) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_BURM7 (Putative iron-sulfur cluster insertion protein erpA OS=Burkholderia mallei (strain NCTC 10247) GN=erpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T E+    + T+ A   + ++  E    DL LR+ V+ GGCSG  Y   F+   N   DD+V+  +G V++ D  S  +L G ++DY D L G  F  KNPNAT TCGCG SF+
Sbjct:   10 TTEMPAPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNE--DDTVLNKNGVVLLVDAMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SHISS (Iron-binding protein iscA OS=Shigella sonnei (strain Ss046) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SHIFL (Iron-binding protein iscA OS=Shigella flexneri GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SHIDS (Iron-binding protein iscA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +     P+D V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPT--PEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ERPA_BURP63.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURP13.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURP03.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURMS3.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURMA3.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURM93.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_BURM73.947e-1740.35Putative iron-sulfur cluster insertion protein erp... [more]
ISCA_SHISS5.155e-1742.45Iron-binding protein iscA OS=Shigella sonnei (stra... [more]
ISCA_SHIFL5.155e-1742.45Iron-binding protein iscA OS=Shigella flexneri GN=... [more]
ISCA_SHIDS5.155e-1742.45Iron-binding protein iscA OS=Shigella dysenteriae ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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