BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_DECAR (Putative iron-sulfur cluster insertion protein erpA OS=Dechloromonas aromatica (strain RCB) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  151 ELKPAILLTENALKHLNKM-RSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            E+    + T+NA   + ++   E +  L LR+ V  GGCSG  Y   F+   N   DD+ +E +G  ++ DP S  +L G ++DY++ L G  F  +NPNAT TCGCG SF+A
Sbjct:    6 EMAVPFVFTDNAAGKVKELIEEEGNPGLKLRVFVTGGGCSGFQYGFTFDEEVNE--DDTTMEKNGVTLLIDPMSYQYLVGAEIDYTEGLEGSQFVIRNPNATSTCGCGSSFSA 116          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_AZOSB (Putative iron-sulfur cluster insertion protein erpA OS=Azoarcus sp. (strain BH72) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.155e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  151 ELKPAILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFAA 486
            E    ++ T+NA   + ++  E     L LR+ V  GGCSG  Y   F+   N   DD+  E +G  ++ DP S  +L G ++DY++ L G  F  +NPNAT TCGCG SF+A
Sbjct:    6 ETPEILVFTDNAANKVRELIDEEGNPALKLRVFVTGGGCSGFQYGFTFDEEVNE--DDTAFEKNGVTLLIDPMSYQYLVGAEIDYTEGLEGSQFVIRNPNATSTCGCGSSFSA 116          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_XENNE (Iron-binding protein iscA OS=Xenorhabdus nematophilus GN=iscA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 43/106 (40.57%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I LTE+A + +      R + + LR+GV+  GCSGM+Y +EF +  N   +D V E  G  ++ D KS+L+L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISLTESAAQRIVAFLDNRGKGVGLRLGVRTSGCSGMAYVLEFADVVNE--EDQVFEDKGVKVIVDGKSILYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_SERP5 (Iron-binding protein iscA OS=Serratia proteamaculans (strain 568) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + +    + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KSL++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SITMSDSAAQRVQAFMNNRGKGLGLRLGVRTSGCSGMAYVLEFVDDMN--DDDIVFENKGVKVIIDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP3 (Iron-binding protein iscA OS=Klebsiella pneumoniae (strain 342) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNSFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAA--EDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_MANSM (Iron-sulfur cluster insertion protein erpA OS=Mannheimia succiniciproducens (strain MBEL55E) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  145 TEELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            T+   P       A K  N +  E ++DL LR+ +  GGCSG  Y   F+ + N    D  IE DG  +V DP SL +L G  +DY++ L G  F   NPNAT TCGCG SF+
Sbjct:    2 TDMTIPLTFTDAAAKKVKNLIIEEENQDLKLRVYITGGGCSGFQYGFTFDEKVN--DGDLTIENDGVKLVIDPMSLQYLIGGTVDYTEGLEGSRFVVHNPNATTTCGCGSSFS 112          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA2_METCA (Iron-sulfur cluster insertion protein erpA 2 OS=Methylococcus capsulatus GN=erpA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.732e-17
Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  166 ILLTENALKHLNKMRSERSE-DLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            I  T++A + ++++ +E  + +L LR+ V  GGCSG  Y   F+   N   DD+V+E +G  ++ DP SL +L G ++DY++ + G  F  +NPNAT TCGCG SF+
Sbjct:   25 IKFTDSAAQRVSELLAEEGDQNLKLRVYVTGGGCSGFQYGFTFDEVVNE--DDTVVEKNGVSVLVDPMSLQYLQGAEIDYTENVSGSQFVIRNPNATTTCGCGSSFS 129          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP7 (Iron-binding protein iscA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=iscA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I L+++A   +N   + R +   LR+GV+  GCSGM+Y +EF +   A  +D+V E  G  +V D KSL FL G QLD+    +  GF F NPN    CGCG+SF
Sbjct:    2 SITLSDSAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAA--EDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_SHEPW (Iron--sulfur cluster insertion protein erpA OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 46/112 (41.07%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  148 EELKPAILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            E+  P       ALK    +  E ++ L LR+ V  GGCSG  Y   F+ + N    D  +E  G  +V DP SL +L G ++DY+  L G  F+ KNPNAT TCGCG SF+
Sbjct:    6 EDALPISFTDAAALKVKTLLDEEENDALKLRVYVTGGGCSGFQYGFTFDEKVNE--GDFTVEKQGVQLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_SHEFN (Iron-sulfur cluster insertion protein erpA OS=Shewanella frigidimarina (strain NCIMB 400) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 44/100 (44.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  184 ALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A+K    +  E++ +L LR+ V  GGCSG  Y   F+ + N    D  IE  G  +V DP SL +L G ++DY+  L G  F+ KNPNAT TCGCG SF+
Sbjct:   18 AIKVKGLLEEEQNPELKLRVYVTGGGCSGFQYGFTFDEKVNE--GDFTIEKQGVQLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFS 115          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ERPA_DECAR5.155e-1738.94Putative iron-sulfur cluster insertion protein erp... [more]
ERPA_AZOSB5.155e-1738.94Putative iron-sulfur cluster insertion protein erp... [more]
ISCA_XENNE6.732e-1740.57Iron-binding protein iscA OS=Xenorhabdus nematophi... [more]
ISCA_SERP56.732e-1739.62Iron-binding protein iscA OS=Serratia proteamacula... [more]
ISCA_KLEP36.732e-1742.45Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ERPA_MANSM6.732e-1741.59Iron-sulfur cluster insertion protein erpA OS=Mann... [more]
ERPA2_METCA6.732e-1740.19Iron-sulfur cluster insertion protein erpA 2 OS=Me... [more]
ISCA_KLEP78.793e-1742.45Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ERPA_SHEPW8.793e-1741.07Iron--sulfur cluster insertion protein erpA OS=She... [more]
ERPA_SHEFN8.793e-1744.00Iron-sulfur cluster insertion protein erpA OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
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