BQ623290

Overview
NameBQ623290
Unique NameBQ623290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1913 contig Csv1_Contig1913:68..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ERPA_PSEE4 (Iron-sulfur cluster insertion protein erpA OS=Pseudomonas entomophila (strain L48) GN=erpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.793e-17
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSED-LCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSFA 483
            A+  T  A   +  + SE   D L LR+ V  GGCSG  Y   F+   +   DD+++E +G  +V DP S  +L G ++DY + L G  F  KNPNAT TCGCG SF+
Sbjct:   10 ALEFTPGAAHKVKTLVSEEGNDRLKLRVFVTGGGCSGFQYGFTFDE--DVAEDDTIVEREGVALVVDPMSFQYLAGAEVDYQEGLEGSRFVIKNPNATTTCGCGSSFS 115          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPY (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPS (Iron-binding protein iscA OS=Yersinia pseudotuberculosis GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPP (Iron-binding protein iscA OS=Yersinia pestis (strain Pestoides F) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPN (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPG (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPE (Iron-binding protein iscA OS=Yersinia pestis GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPB (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERPA (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Match: ISCA_YERP3 (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=iscA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.148e-16
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  163 AILLTENALKHLNKMRSERSEDLCLRIGVKQGGCSGMSYTMEFENRANARPDDSVIEYDGFVIVCDPKSLLFLFGMQLDYSDALIGGGFYFKNPNATQTCGCGKSF 480
            +I ++++A + ++   + R + L LR+GV+  GCSGM+Y +EF +  N   DD V E  G  ++ D KS+++L G +LD+    +  GF F NPN +  CGCG+SF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEIN--DDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of BQ623290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
ERPA_PSEE48.793e-1741.67Iron-sulfur cluster insertion protein erpA OS=Pseu... [more]
ISCA_YERPY1.148e-1638.68Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPS1.148e-1638.68Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPP1.148e-1638.68Iron-binding protein iscA OS=Yersinia pestis (stra... [more]
ISCA_YERPN1.148e-1638.68Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPG1.148e-1638.68Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPE1.148e-1638.68Iron-binding protein iscA OS=Yersinia pestis GN=is... [more]
ISCA_YERPB1.148e-1638.68Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPA1.148e-1638.68Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERP31.148e-1638.68Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00381 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00381 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623290 ID=BQ623290; Name=BQ623290; organism=Citrus sinensis; type=EST; length=642bp
TCTCTCCTTCGCCTTCCCAACGGTCATACACCGTCGATCTCCGTTAATCA
GAACTCAGTCTCCTTTCGTTTCTCGAAATTAAATCTCAGCCGTCGATATT
CAGTTTCAGTCCGATCATCCTCTACATCAGCGGTTGCGCCGGCGACGGAG
GAGCTGAAGCCGGCGATTTTACTGACAGAGAATGCACTAAAGCATCTAAA
TAAGATGAGGTCTGAGCGTAGTGAGGATTTGTGCTTAAGAATTGGAGTGA
AACAGGGCGGATGCTCCGGCATGTCTTACACGATGGAGTTTGAGAACAGA
GCAAATGCGAGACCAGATGATTCGGTTATCGAATATGATGGTTTTGTGAT
AGTTTGTGATCCAAAGAGTCTCCTCTTTTTGTTTGGGATGCAATTGGATT
ACAGTGATGCCCTTATTGGTGGAGGCTTTTATTTCAAGAACCCAAATGCT
ACGCAAACTTGCGGGTGTGGTAAATCATTTGCAGCAGAGATGTGAAATAC
ATACTGGTTTATACTAGACAATCCAAGTATTGAACATGTCGTTAGTAGTT
GTGTAAAAAGAAAACTTTGAAAATGATAGTCGCCATTTACTTGATTATCT
CATATTCTCTTTGGTCTGGTAAGGAAATGAGCATAATTTGGA
back to top