BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.290e-54
Identity = 109/142 (76.76%), Postives = 121/142 (85.21%), Query Frame = 3
Query:   63 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK ++ KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.296e-54
Identity = 108/142 (76.06%), Postives = 120/142 (84.51%), Query Frame = 3
Query:   63 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRA            AQSALRALARSGMKIGRIEDVTPIP+D TRR
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_DROME (40S ribosomal protein S14 OS=Drosophila melanogaster GN=RpS14a PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.382e-52
Identity = 107/142 (75.35%), Postives = 118/142 (83.10%), Query Frame = 3
Query:   63 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14A_DROYA (40S ribosomal protein S14a OS=Drosophila yakuba GN=RpS14a PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.382e-52
Identity = 107/142 (75.35%), Postives = 118/142 (83.10%), Query Frame = 3
Query:   63 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +  KEE  V LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKAKVQKEEVQVQLGPQVRDGEIVFGVAHIYASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_NEUCR (40S ribosomal protein S14 OS=Neurospora crassa GN=rps-14 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.859e-52
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 3
Query:   63 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M  +K   P +EN++LGP +R+GE VFGVA IFASFNDTF+HVTDLSGRET  R+ GG+KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIK+RA            AQSALRALARSGMKIGRIEDVTP P+DSTRR
Sbjct:    1 MPPKKAARPAQENISLGPQIREGELVFGVARIFASFNDTFVHVTDLSGRETTDRVIGGIKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKIRATGGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRR 141          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_AEDAE (40S ribosomal protein S14 OS=Aedes aegypti GN=RpS14 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.859e-52
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 3
Query:   63 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +  KEE  V+LGP VR+GE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DSTRR
Sbjct:    1 MAPRKNKTVKEEVQVSLGPQVREGEIVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14B_ANOGA (40S ribosomal protein S14b OS=Anopheles gambiae GN=RpS14b PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 6.859e-52
Identity = 105/139 (75.54%), Postives = 117/139 (84.17%), Query Frame = 3
Query:   72 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DSTRR
Sbjct:    5 RKNKVAKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRR 143          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14A_ANOGA (40S ribosomal protein S14a OS=Anopheles gambiae GN=RpS14a PE=3 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.958e-52
Identity = 105/139 (75.54%), Postives = 117/139 (84.17%), Query Frame = 3
Query:   72 RKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            RK +  KEE  V+LGP VRDGE VFGVAHI+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTPIP+DSTRR
Sbjct:    5 RKNKVVKEEVQVSLGPQVRDGEVVFGVAHIYASFNDTFVHVTDLSGKETISRVTGGMKVKADRDEASPYAAMLAAQDVAEKCKSLGITALHIKLRATGGNRTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRR 143          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_BOMMO (40S ribosomal protein S14 OS=Bombyx mori GN=RpS14 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.807e-51
Identity = 105/142 (73.94%), Postives = 116/142 (81.69%), Query Frame = 3
Query:   63 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +  KEE  VTLGP    GE VFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAMLAAQDV+++CK LGITALHIKLRA            AQSALRALARS MKIGRIEDVTP+P+DSTRR
Sbjct:    1 MAPRKNKVAKEEVQVTLGPQHLVGETVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRATGGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPVPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_CAEEL (40S ribosomal protein S14 OS=Caenorhabditis elegans GN=rps-14 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.294e-50
Identity = 99/142 (69.72%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   60 AMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            A +R+   + ++  V+LGP  ++GE +FGVAHIFASFNDTF+H+TD+SGRET+VR+TGGMKVKADRDESSPYAAMLAAQDV+ RCK+LGI ALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIP+D TRR
Sbjct:    2 APARKGKAKEEQAVVSLGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRR 143          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS14_RAT3.290e-5476.7640S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_PODCA4.296e-5476.0640S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_DROME1.382e-5275.3540S ribosomal protein S14 OS=Drosophila melanogast... [more]
RS14A_DROYA1.382e-5275.3540S ribosomal protein S14a OS=Drosophila yakuba GN... [more]
RS14_NEUCR6.859e-5273.0540S ribosomal protein S14 OS=Neurospora crassa GN=... [more]
RS14_AEDAE6.859e-5273.9440S ribosomal protein S14 OS=Aedes aegypti GN=RpS1... [more]
RS14B_ANOGA6.859e-5275.5440S ribosomal protein S14b OS=Anopheles gambiae GN... [more]
RS14A_ANOGA8.958e-5275.5440S ribosomal protein S14a OS=Anopheles gambiae GN... [more]
RS14_BOMMO5.807e-5173.9440S ribosomal protein S14 OS=Bombyx mori GN=RpS14 ... [more]
RS14_CAEEL1.294e-5069.7240S ribosomal protein S14 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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