BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_PROCL (40S ribosomal protein S14 OS=Procambarus clarkii GN=RPS14 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.186e-49
Identity = 100/142 (70.42%), Postives = 113/142 (79.58%), Query Frame = 3
Query:   63 MSRRKTREPKEE-NVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            M+ RK +  KEE  V LGP V DGE VF V HI+AS+NDTF+HVTDLSGRET+VRITGG KVKADRDESSPYAAMLAAQDV+++CK LGI  LHIK+RA             QSALRALAR+GMKIGRIEDVTP+P+DSTRR
Sbjct:    1 MAPRKGKVQKEEVQVQLGPQVLDGEKVFAVCHIYASYNDTFVHVTDLSGRETIVRITGGQKVKADRDESSPYAAMLAAQDVAEKCKSLGINCLHIKIRATGGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRR 142          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_SCHPO (40S ribosomal protein S14 OS=Schizosaccharomyces pombe GN=rps14a PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.581e-48
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = 3
Query:  108 LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +GP +R GE VFGVAHIFASFNDTF+H+TDL+G+ET+VR+TGGMKVK DRDESSPYAAMLAAQD + +CKE+GITALHIK+RA            AQ+ALRALAR+GM+IGRIEDVTPIPTDSTRR
Sbjct:    5 VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRALARAGMRIGRIEDVTPIPTDSTRR 130          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_DICDI (40S ribosomal protein S14 OS=Dictyostelium discoideum GN=rps14 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.933e-46
Identity = 97/137 (70.80%), Postives = 107/137 (78.10%), Query Frame = 3
Query:   75 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            K  E     +  GP+    E VFGVAHIFASFNDTF+HVTDLS +ET+VR+TGGMKVK DRDESSPYAA +AAQDV+ RCKELG+TALHIKLRA            AQSALRALARSGM+IGRIEDVTPIPTDSTRR
Sbjct:   11 KVVEALSAKIPCGPS----ELVFGVAHIFASFNDTFVHVTDLSSKETIVRVTGGMKVKTDRDESSPYAATMAAQDVALRCKELGVTALHIKLRATGGNGSKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRR 143          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_KLULA (40S ribosomal protein S14 OS=Kluyveromyces lactis GN=RPS14 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.061e-44
Identity = 87/121 (71.90%), Postives = 102/121 (84.30%), Query Frame = 3
Query:  123 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +D   VFGVA IFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIK+RA             Q+ALRALARSG++IGRIEDVTP+P+DSTR+
Sbjct:    8 KDNSQVFGVARIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRK 128          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_CANAL (40S ribosomal protein S14 OS=Candida albicans GN=RPS14 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.363e-44
Identity = 88/116 (75.86%), Postives = 100/116 (86.21%), Query Frame = 3
Query:  138 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            VFGVA IFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+HIKLRA             QSALRALARSG++IGRIEDVTP+P+DSTRR
Sbjct:   10 VFGVARIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKLRATGGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRR 125          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14B_YEAST (40S ribosomal protein S14-B OS=Saccharomyces cerevisiae GN=RPS14B PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.086e-44
Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 3
Query:  123 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DSTR+
Sbjct:    9 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRK 129          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14A_YEAST (40S ribosomal protein S14-A OS=Saccharomyces cerevisiae GN=RPS14A PE=1 SV=5)

HSP 1 Score: 178.333 bits (451), Expect = 3.086e-44
Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 3
Query:  123 RDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            RD   VFGVA I+ASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKE+GITA+H+K+RA             Q+ALRALARSG++IGRIEDVTP+P+DSTR+
Sbjct:    8 RDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRK 128          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_TRYBB (40S ribosomal protein S14 OS=Trypanosoma brucei brucei GN=RPS14 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.264e-44
Identity = 88/132 (66.67%), Postives = 103/132 (78.03%), Query Frame = 3
Query:   90 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            K+E    G +    + V+GV HI+ASFNDTF+HVTD+SGRET  ++TGGMKVKADRDESSPYAAM+AAQDV  RCKE GI ALH+K+RA            AQ+ALRALAR+GMKIGRIEDVTP+PTDSTRR
Sbjct:    4 KQEVKYYGSSAGKDQLVYGVVHIYASFNDTFVHVTDMSGRETFCKVTGGMKVKADRDESSPYAAMMAAQDVVARCKECGINALHVKMRATGGVGTKSPGPGAQAALRALARAGMKIGRIEDVTPVPTDSTRR 135          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_TORRU (40S ribosomal protein S14 OS=Tortula ruralis GN=RPS14 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.875e-44
Identity = 92/116 (79.31%), Postives = 100/116 (86.21%), Query Frame = 3
Query:  138 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            VFGVAHIFASFNDTF+HVTDLSG+ET + +TGGMKVKADRDE+SPYAAMLAAQDV+QRCKELGITALHI +RA            AQS LRALARSGM+IGRIEDVTPIPTDSTRR
Sbjct:   11 VFGVAHIFASFNDTFVHVTDLSGKETSLVLTGGMKVKADRDEASPYAAMLAAQDVAQRCKELGITALHINVRATGGNKTKTPGPGAQS-LRALARSGMRIGRIEDVTPIPTDSTRR 125          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_AERPE (30S ribosomal protein S11P OS=Aeropyrum pernix GN=rps11p PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 68/115 (59.13%), Postives = 88/115 (76.52%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +GVAHI++SFN+T +H+TDL+G ET+ R+TGGM VKADR++ SPYAAM+AA   +Q+  E GI A+HIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+TRR
Sbjct:   10 WGVAHIYSSFNNTHVHITDLTGAETVARVTGGMVVKADREKPSPYAAMIAASRAAQKAMERGIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTTRR 124          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS14_PROCL3.186e-4970.4240S ribosomal protein S14 OS=Procambarus clarkii G... [more]
RS14_SCHPO1.581e-4873.8140S ribosomal protein S14 OS=Schizosaccharomyces p... [more]
RS14_DICDI1.933e-4670.8040S ribosomal protein S14 OS=Dictyostelium discoid... [more]
RS14_KLULA1.061e-4471.9040S ribosomal protein S14 OS=Kluyveromyces lactis ... [more]
RS14_CANAL2.363e-4475.8640S ribosomal protein S14 OS=Candida albicans GN=R... [more]
RS14B_YEAST3.086e-4470.2540S ribosomal protein S14-B OS=Saccharomyces cerev... [more]
RS14A_YEAST3.086e-4470.2540S ribosomal protein S14-A OS=Saccharomyces cerev... [more]
RS14_TRYBB5.264e-4466.6740S ribosomal protein S14 OS=Trypanosoma brucei br... [more]
RS14_TORRU6.875e-4479.3140S ribosomal protein S14 OS=Tortula ruralis GN=RP... [more]
RS11_AERPE1.216e-3259.1330S ribosomal protein S11P OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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