BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_THESM (30S ribosomal protein S11P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps11p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.523e-32
Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +GVAHI+AS+N+T IH+TDL+G ET+ + +GGM VKADRDESSPYAAM+AA+  ++   E GI  +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D TR
Sbjct:   16 WGVAHIYASYNNTIIHITDLTGAETISKWSGGMVVKADRDESSPYAAMIAARRAAEEAMEKGINGVHIKVRAPGGSKSKNPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGTR 129          

HSP 2 Score: 20.4014 bits (41), Expect = 8.523e-32
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  131 KGGRRGRRV 139          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.756e-31
Identity = 68/115 (59.13%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +G+AHI+ASFN+T I +TDL+G ET  R +GGM V ADR+ESSPYAAM AA+  ++   E GITA+H+K+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D TRR
Sbjct:   14 WGIAHIYASFNNTIITITDLTGAETFARWSGGMVVDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGTRR 128          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRKO (30S ribosomal protein S11P OS=Pyrococcus kodakaraensis GN=rps11p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.883e-31
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E GIT +HIK+RA            AQ+A+RAL+R+G++IGR+EDVTPIP D TR
Sbjct:   17 WGVAHIYSSYNNTIIHITDLTGAETISRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGITGVHIKVRAPGGSKSKSPGPGAQAAIRALSRAGLRIGRVEDVTPIPHDGTR 130          

HSP 2 Score: 20.4014 bits (41), Expect = 1.883e-31
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  132 KGGRRGRRV 140          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRFU (30S ribosomal protein S11P OS=Pyrococcus furiosus GN=rps11p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.454e-31
Identity = 65/114 (57.02%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHI++SFN+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D TR
Sbjct:   14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTR 127          

HSP 2 Score: 20.4014 bits (41), Expect = 2.454e-31
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  129 KGGRRGRRV 137          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.996e-31
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAMLAA   +Q+  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+TRR
Sbjct:   10 WGVAHIYSSYNNTIIHITDLTGAETVARTSGGMVVKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTTRR 124          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METMJ (30S ribosomal protein S11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.205e-31
Identity = 68/117 (58.12%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  132 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            E  +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A  V+Q  ++ GIT +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS R
Sbjct:    3 EEKWGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAIQVAQNARDKGITGVHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDSIR 119          

HSP 2 Score: 20.4014 bits (41), Expect = 3.205e-31
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  121 KGGRRGRRV 129          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.913e-31
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +GVAHIF+S N+TF+H+TD++G ET  R+TGGM VKAD ++ SPYAAM+AA   +Q+  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+ RR
Sbjct:    7 WGVAHIFSSPNNTFVHITDITGSETASRVTGGMVVKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDTIRR 121          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.421e-31
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D TR
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTR 127          

HSP 2 Score: 20.4014 bits (41), Expect = 5.421e-31
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  129 KGGRRGRRV 137          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.421e-31
Identity = 64/114 (56.14%), Postives = 86/114 (75.44%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  ++   E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D TR
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTR 127          

HSP 2 Score: 20.4014 bits (41), Expect = 5.421e-31
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  129 KGGRRGRRV 137          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_THEON (30S ribosomal protein S11P OS=Thermococcus onnurineus (strain NA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.196e-30
Identity = 64/114 (56.14%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D TR
Sbjct:   16 WGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAAKRAAEEAMEKGFVGVHIKVRAPGGSKSKTPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGTR 129          

HSP 2 Score: 20.4014 bits (41), Expect = 1.196e-30
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  131 KGGRRGRRV 139          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_THESM8.523e-3257.8930S ribosomal protein S11P OS=Thermococcus sibiric... [more]
RS11_METKA1.756e-3159.1330S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_PYRKO1.883e-3157.0230S ribosomal protein S11P OS=Pyrococcus kodakarae... [more]
RS11_PYRFU2.454e-3157.0230S ribosomal protein S11P OS=Pyrococcus furiosus ... [more]
RS11_HYPBU2.996e-3158.2630S ribosomal protein S11P OS=Hyperthermus butylic... [more]
RS11_METMJ3.205e-3158.1230S ribosomal protein S11P OS=Methanoculleus maris... [more]
RS11_IGNH43.913e-3158.2630S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_PYRHO5.421e-3156.1430S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRAB5.421e-3156.1430S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_THEON1.196e-3056.1430S ribosomal protein S11P OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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