BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_GRABC (30S ribosomal protein S11 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 41/113 (36.28%), Postives = 58/113 (51.33%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAH+ A+FN+T I ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++               +SALRAL   G  I  I D TPIP +  R
Sbjct:   21 GVAHVAATFNNTMITISDAQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGSGRESALRALQAVGFAITAIRDTTPIPHNGCR 124
[Close]
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_ENT38 (30S ribosomal protein S11 OS=Enterobacter sp. (strain 638) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 41/113 (36.28%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE GI  L + ++              +S +RAL  +G +I  I DVTPIP +  R
Sbjct:   19 GVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCAEAVKEYGIKNLEVMVKG--------PGPGRESTVRALNAAGFRITNITDVTPIPHNGCR 122
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_GRABC7.672e-1136.2830S ribosomal protein S11 OS=Granulibacter bethesd... [more]
RS11_ENT387.672e-1136.2830S ribosomal protein S11 OS=Enterobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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