BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.200e-30
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 3
Query:  126 DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+  +GVAHI+ASFN+T I VTDL+G ET+ + +GGM VK DR+ESSPYAAM  A +V+Q  +E GI  LH+K+RA            AQ+A+RALAR+GM+IG IEDVTP+P DS R
Sbjct:    3 EGKEKWGVAHIYASFNNTIITVTDLTGAETITKSSGGMVVKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDSIR 121          

HSP 2 Score: 20.4014 bits (41), Expect = 1.200e-30
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  123 KGGRRGRRV 131          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_THEGJ (30S ribosomal protein S11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.028e-30
Identity = 63/114 (55.26%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +GVAHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D TR
Sbjct:   15 WGVAHIYSSYNNTIIHITDITGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFVGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGTR 128          

HSP 2 Score: 20.4014 bits (41), Expect = 2.028e-30
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  130 KGGRRGRRV 138          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.536e-30
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +GVAHI++S N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAM+AA   +    + GITALHIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+TRR
Sbjct:   10 WGVAHIYSSLNNTIIHITDLTGAETVSRWSGGMVVKADREKPSPYAAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTTRR 124          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.845e-30
Identity = 66/114 (57.89%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS R
Sbjct:    9 WGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDSCR 122          

HSP 2 Score: 20.4014 bits (41), Expect = 5.845e-30
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  124 KGGRRGRRV 132          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METLZ (30S ribosomal protein S11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.623e-30
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK  R+ESSPYAAM  A +++Q  K+ GIT LHI++RA            AQ+A+RAL+R+GM+IGRIEDVTP+P DS R
Sbjct:    8 WGIAHIFASFNNTIITVTDLSGAETICKSSGGMVVKQARNESSPYAAMQMAINIAQASKDKGITGLHIRVRAPGNGRQRSPGPGAQAAIRALSRAGMRIGRIEDVTPVPHDSIR 121          

HSP 2 Score: 20.4014 bits (41), Expect = 7.623e-30
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1
Query:  487 RGGRRGRKV 513
            +GGRRGR+V
Sbjct:  123 KGGRRGRRV 131          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS14_ENCCU (40S ribosomal protein S14 OS=Encephalitozoon cuniculi GN=RPS14 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  147 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            VAHI A+ NDTF+H+TD++G ET+ +ITGGM+VKA RDE SPYAAMLAAQDV+ +    G+  LH KLR             AQ+A+R L R+G+++GRIEDVTP+  D  R+
Sbjct:   13 VAHIKATKNDTFVHITDMTGSETIAKITGGMRVKAQRDEGSPYAAMLAAQDVATKILGRGVKVLHFKLRGAGGVKPMALGPGAQTAIRTLIRAGLRVGRIEDVTPVARDRVRK 125          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METTP (30S ribosomal protein S11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps11p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.159e-29
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  132 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            E  + +AHI++SFN+T I +TDL+G ET+ +I+GGM VKA RDESSPY AM  A  V+++ K  GI  +H+K+RA            AQ+A+RALAR+G++IGRIEDVTPIP D T+
Sbjct:    3 EGKWAIAHIYSSFNNTLITITDLTGAETIAKISGGMVVKAARDESSPYTAMQMAMQVAEQAKAKGIVGVHVKVRAPGGNKQRSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGTK 119          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_UNCMA (30S ribosomal protein S11P OS=Uncultured methanogenic archaeon RC-I GN=rps11p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.066e-28
Identity = 63/114 (55.26%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            + +AHIF+SFN+T I VTDL+G ETL + +GGM VK DR+ESSPYAAM  A +V+++ K  GI  +HI++RA            AQ+A+R+LAR+G++IGRIEDVTPIP D TR
Sbjct:    9 WAIAHIFSSFNNTIITVTDLTGAETLAKTSGGMVVKQDRNESSPYAAMQMAMNVAEQIKAKGIQGVHIRVRAPGGNHQRSPGPGAQAAIRSLARAGLRIGRIEDVTPIPHDGTR 122          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_ARCFU (30S ribosomal protein S11P OS=Archaeoglobus fulgidus GN=rps11p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.392e-28
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+AHI++S+N+T I +TD++G E + R++GGM VKADRDE +PY AM AA   +   KE GI  +HIK+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D TR
Sbjct:   10 WGIAHIYSSYNNTIITITDITGAEIIARVSGGMIVKADRDEGNPYTAMQAALRAAAIAKEKGIDGVHIKVRAPGGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGTR 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_META3 (30S ribosomal protein S11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps11p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.100e-28
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 479
            +GV HI+AS+N+T IHVTD++G ET+ +I+GGM VK  +DESSPYAAM  A  ++   +E GI  +HIK+RA            AQ+A+RALAR+G+KIGRIED TPIP D T
Sbjct:    5 WGVIHIYASYNNTIIHVTDITGAETIAKISGGMIVKNQKDESSPYAAMQGAFKIADMIREKGIDKVHIKVRATGGSKSKNPGPGAQAAIRALARAGIKIGRIEDATPIPHDGT 117          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_METHJ1.200e-3056.3030S ribosomal protein S11P OS=Methanospirillum hun... [more]
RS11_THEGJ2.028e-3055.2630S ribosomal protein S11P OS=Thermococcus gammato... [more]
RS11_STAMF2.536e-3058.2630S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS11_METB65.845e-3057.8930S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_METLZ7.623e-3057.8930S ribosomal protein S11P OS=Methanocorpusculum l... [more]
RS14_ENCCU6.247e-2953.9840S ribosomal protein S14 OS=Encephalitozoon cunic... [more]
RS11_METTP8.159e-2952.9930S ribosomal protein S11P OS=Methanosaeta thermop... [more]
RS11_UNCMA1.066e-2855.2630S ribosomal protein S11P OS=Uncultured methanoge... [more]
RS11_ARCFU1.392e-2854.3930S ribosomal protein S11P OS=Archaeoglobus fulgid... [more]
RS11_META33.100e-2854.8730S ribosomal protein S11P OS=Methanococcus aeolic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
back to top