BQ623292

Overview
NameBQ623292
Unique NameBQ623292
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:10..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METJA (30S ribosomal protein S11P OS=Methanocaldococcus jannaschii GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 479
            +G+ HI++S+N+T IH TD++G ET+ R++GG   +  RDE SPYAAM AA  +++  KE GI  +HIK+RA            AQ+A+RALAR+G++IGRIEDVTP+P D T
Sbjct:    9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_THEVO (30S ribosomal protein S11P OS=Thermoplasma volcanium GN=rps11p PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 63/114 (55.26%), Postives = 82/114 (71.93%), Query Frame = 3
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS+  KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T++
Sbjct:   10 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSETLKEHEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGTKK 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METBU (30S ribosomal protein S11P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  138 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            ++GVAHI  SFN+T I VTDL+G ET+ + +GGM VKA RDESSPY AM  A  ++   ++ G+  +HIK+RA            AQ+A+RA AR+G++IGRIEDVTP+P D TR
Sbjct:    5 IWGVAHIKCSFNNTIITVTDLTGAETIAKSSGGMVVKAARDESSPYTAMQMATQLADILRDKGLEGVHIKVRAPGGNKQRSPGPGAQAAIRAFARAGVRIGRIEDVTPVPHDGTR 119          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_NATPD (30S ribosomal protein S11P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 57/114 (50.00%), Postives = 83/114 (72.81%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+A+++ASFN+T I VTD++G ET+V+ +GG  VK +RDE+SPYAAM  A+ V++  K+ GI  +H+++R             AQ+ +RALAR+G++IGRIEDVTPIP D TR
Sbjct:    7 WGIANVYASFNNTIITVTDMTGAETIVKSSGGTVVKQNRDEASPYAAMQMAEVVAEDVKDAGIDGVHVRVRGPGGNQQQNPGPGAQATIRALARAGLEIGRIEDVTPIPHDGTR 120          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_SULTO (30S ribosomal protein S11P OS=Sulfolobus tokodaii GN=rps11p PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            +G+A ++AS N+T I +TD++G E + R +GGM VKADR++ SPYAAMLAA   +    + GI+A+HIK+RA            AQ A+RALAR+G  IGRIEDVTPIP DS RR
Sbjct:    9 WGIARVYASQNNTLITITDITGAEIISRASGGMVVKADREKPSPYAAMLAANKAATEAFDKGISAIHIKVRAQGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDSIRR 123          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METAC (30S ribosomal protein S11P OS=Methanosarcina acetivorans GN=rps11p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + K+ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D TR
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLKDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGTR 119          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_CALMQ (30S ribosomal protein S11P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps11p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 60/114 (52.63%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            +G+A+I+AS N+T I +TDL+G ET+ R++GG  VKADRD+ SPYAAM+AA   +Q     GI A+H+K+R             A +A+RALAR+GM IGRIEDVTPIP D+ R
Sbjct:    9 WGIAYIYASSNNTMIIITDLTGSETVARVSGGQVVKADRDKPSPYAAMMAAYKAAQIAMARGINAVHVKVRGPGGYGLKVPGPGAVAAIRALARAGMIIGRIEDVTPIPHDTIR 122          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METMA (30S ribosomal protein S11P OS=Methanosarcina mazei GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D TR
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGINGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGTR 119          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_METBF (30S ribosomal protein S11P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps11p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25
Identity = 58/114 (50.88%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  141 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTR 482
            + VAHI +SFN+T I VTD++G ET+ + +GGM VKA RDESSPY AM  A  ++ + ++ GI  +HI++RA            AQ+A+RA AR+G++IGRIEDVTP+P D TR
Sbjct:    6 WAVAHIKSSFNNTIITVTDITGAETIAKSSGGMVVKAARDESSPYTAMQMAGQLADQLRDKGIHGIHIRVRAPGGNKQRSPGPGAQAAIRAFARAGIRIGRIEDVTPVPHDGTR 119          
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Match: RS11_PICTO (30S ribosomal protein S11P OS=Picrophilus torridus GN=rps11p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.327e-25
Identity = 62/114 (54.39%), Postives = 81/114 (71.05%), Query Frame = 3
Query:  144 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDSTRR 485
            G+AHI+AS N+T I VTD +G ET+ + +GGM VK DRDE+SPYAAM AA  VS++ +E  IT L I++RA            AQSA+RAL+R+G KI RIE+VTPIP D T++
Sbjct:    5 GIAHIYASQNNTIILVTDPTGAETIAKSSGGMVVKNDRDEASPYAAMRAADMVSEKLREREITDLIIRVRAPGGSKSKIPGPGAQSAIRALSRAGFKILRIEEVTPIPHDGTKK 118          

HSP 2 Score: 20.7866 bits (42), Expect = 1.327e-25
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  484 ERGGRRGRKV 513
            ++GGRRGR+V
Sbjct:  118 KKGGRRGRRV 127          
The following BLAST results are available for this feature:
BLAST of BQ623292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
RS11_METJA7.637e-2750.4430S ribosomal protein S11P OS=Methanocaldococcus j... [more]
RS11_THEVO9.974e-2755.2630S ribosomal protein S11P OS=Thermoplasma volcani... [more]
RS11_METBU1.303e-2652.1730S ribosomal protein S11P OS=Methanococcoides bur... [more]
RS11_NATPD2.222e-2650.0030S ribosomal protein S11P OS=Natronomonas pharaon... [more]
RS11_SULTO2.902e-2653.0430S ribosomal protein S11P OS=Sulfolobus tokodaii ... [more]
RS11_METAC2.902e-2651.7530S ribosomal protein S11P OS=Methanosarcina aceti... [more]
RS11_CALMQ3.790e-2652.6330S ribosomal protein S11P OS=Caldivirga maquiling... [more]
RS11_METMA6.465e-2650.8830S ribosomal protein S11P OS=Methanosarcina mazei... [more]
RS11_METBF1.103e-2550.8830S ribosomal protein S11P OS=Methanosarcina barke... [more]
RS11_PICTO1.327e-2554.3930S ribosomal protein S11P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00383 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00383 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623292 ID=BQ623292; Name=BQ623292; organism=Citrus sinensis; type=EST; length=670bp
GGCCAGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTCCGTG
TCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGGAAAA
TGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGCGTTG
CCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGACTTG
TCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTAAAGC
TGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAAGATG
TTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAAGCTC
CGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTCAGTC
AGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATAGAGG
ATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGGTGGTAGAAG
GGGTAGAAAGGTTGTAATTCTTTTCCTCACACCCATCCATAACGTTCAAG
ATGATGCCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGATGCCAAG
AGTTATTTCCCAATTTTGTTGTTTGGAATGTGCTGTAGTCTTGGATTCCC
TTTGTGTTAGCCTTTTCGGA
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