BQ623299

Overview
NameBQ623299
Unique NameBQ623299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:952..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.026e-19
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   19 GTPLMPGKSVDTYIFALYDEDLKPGPTSERSFGLFKPDLSAAYDVGISKSSQXXXXXXXXXXXXXXXXXXXXXXXXGWCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPS 507
            GTP  PG  + T++F+L++E+ K G  ++R +G+  PD S  YDV  +  +                          WCVP  G ++ +L+ +L  AC+Q    C+ + PG  C+EP ++  HA++A+N Y+         C F+  A  T+ NP  + C +PS
Sbjct:  317 GTPSRPGLPIPTFVFSLFNENQKSGSGTQRHWGILHPDGSPIYDVDFTGQTPLTGFNPLPKPTNNVPYKGQV-----WCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFRNQSIQCFFNGLAHETTTNPGNDRCKFPS 475          
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.458e-16
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  250 WCVPKAGISDAQLQASLDYACSQG-IDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYPSG-GT*NGQTNSQLMLNNG 558
            WCV K    D+ LQ ++++AC QG  DC PIQ GG C +P  V   A+F  N YY  + +    C+F+  A LTS NPS   C YPS  G  NG+      +  G
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPSSKGANNGRLADDTSMGAG 145          
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  250 WCVPKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPS 483
            +C+ K G ++  LQ ++DYAC  G DC+ IQP GAC++PNTV +H   A+N YYQ  A +   CDF+  A+ ++  PS
Sbjct:   21 YCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPS 97          
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 48/166 (28.92%), Postives = 75/166 (45.18%), Query Frame = 1
Query:   19 GTPLMPGKSVDTYIFALYDEDLK---PGPTSERSFGLFKPDLSAAYDVGISKSSQXXXXXXXXXXXXXXXXXXXXXXXXGWCV--PKAGISDAQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSHAAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVY 501
            GTP+ PG ++D Y+F L DED K   PG   ER +G+F  D    Y + +   +                          WC+  P A + D QL  S+ YAC    DC+ +  G +C   N +  + ++A N YYQ S +    C F   + +++++PS   C +
Sbjct:  299 GTPMRPG-AMDAYLFGLIDEDAKSIQPG-NFERHWGIFYIDGQPKYQLSLGSGNGLIPAKDVHYLAKK------------WCILAPNANLQDPQLGPSVSYACDHA-DCTSLGYGSSCGNLN-LAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKF 448          
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 52/168 (30.95%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   19 GTPLMPGKSVDTYIFALYDEDLK---PGPTSERSFGLFKPDLSAAYDVGISKSSQXXXXXXXXXXXXXXXXXXXXXXXXGWCVPKAGISD-AQLQASLDYACSQGIDCSPIQPGGACFEPNTVVSH--AAFAMNLYYQTSAKNPWNCDFSKTATLTSQNPSYNGCVYP 504
            GTPL P   ++ Y+F L DED K   PGP  ER +G+FK D    + + +S   Q                         WC       D  +L A++DYAC+   DC+ +  G +C   NT+ ++  A++A N+++Q   ++   C F   AT+T+QN S   C +P
Sbjct:  297 GTPLRP-TYIEVYLFGLLDEDAKSIAPGPF-ERHWGIFKFDGQPKFPIDLSGQGQSKFLIGAQNVPYLPNK---------WCTFNPEAKDLTKLAANIDYACTFS-DCTALGYGSSC---NTLDANGNASYAFNMFFQVKNQDESACYFQGLATITTQNISQGQCNFP 449          
The following BLAST results are available for this feature:
BLAST of BQ623299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
EA6_ARATH9.026e-1929.88Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13L1_ARATH2.458e-1640.95Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E13L4_ARATH1.142e-1344.87Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E135_ARATH1.396e-1128.92Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E138_ARATH1.823e-1130.95Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00390 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00390 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623299 ID=BQ623299; Name=BQ623299; organism=Citrus sinensis; type=EST; length=630bp
CACCTTAGATCAATGGCTGGAACTCCATTGATGCCTGGAAAATCTGTGGA
TACATATATTTTTGCTCTCTATGATGAGGACTTGAAGCCTGGCCCTACCT
CTGAACGTTCATTCGGGCTCTTCAAGCCAGACCTTTCAGCAGCATATGAT
GTTGGTATTTCAAAGAGTAGCCAGACTCCATCAGCTCCAGTGACTCCATC
AACTCCAAAAACTCCAACGACTCCATCACCAAAACCAACAGCAGCTGGTT
GGTGTGTGCCCAAGGCCGGCATCTCCGATGCACAACTGCAGGCAAGTCTT
GACTATGCCTGCAGCCAAGGCATCGATTGCAGTCCTATCCAGCCAGGAGG
TGCCTGTTTTGAACCAAATACAGTAGTATCACATGCTGCTTTTGCCATGA
ATCTCTACTACCAGACTTCTGCAAAAAATCCATGGAACTGCGACTTCTCA
AAAACGGCAACACTCACATCCCAAAATCCCAGTTACAATGGATGTGTCTA
TCCTAGTGGGGGTACTTGAAATGGCCAGACGAATTCCCAGTTGATGTTGA
ATAATGGAATGTTAAGTGAAATAAAAGTGATGAATCTAATGGTTCCTATT
TTATAGATAGCTTTAATTGTAAAGGGTTCC
back to top