BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 64/187 (34.22%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEEC-GPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G  ++GVRG D+V +  +KK   KL D  S+  +  +  ++ L   G+ ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K+      +ET++ AI  L  V++
Sbjct:   17 LFQVEYALEAVRK-GNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKDTSG---KETIKLAIRALLEVVE 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 63/193 (32.64%), Postives = 106/193 (54.92%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIAD------KSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +A+K  G T+IGV+ KD+V +  +K++   L++  SV  LF I  ++G   +G+TADART+++ AR +    RF Y     ++   + I D      + +   +    RP GV  ++  IDE  GP+L+  +P+G +F ++A + G   + A + L K+   D   T +E     +  L+ V++
Sbjct:   20 RLFQVEYAIEAIKL-GSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKD--MTLEEAEVLILKVLRQVME 208          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 68/189 (35.98%), Postives = 104/189 (55.03%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFK--YGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            +L Q+EYA  AV A GVTS+G++  D V + T+KK   +L    S+  +  IT  +G++ +GM  D R LV ++R + A+  +K  Y    P  +L + IA   Q  TQ   +RP GV  +V  +DE+ GP L++ DP+G +F  KAT+ G     A  FLEK+  ++      + V TAI  L+   +
Sbjct:   17 KLVQIEYALNAVNA-GVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDE--LELDDAVHTAILALKETFE 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.818e-22
Identity = 60/186 (32.26%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AV+  G+ ++GV+GKDS+    +KK   KL D  +   ++ + +++ L + G++ADAR +V  A+ E   FR  Y   + VD+L +++A   Q  TQ +  RP GV  ++   +E   P+L+K +P+G      A + G  ++  + F+EK  ++    T    V  AI  L   ++
Sbjct:   16 LFQVEYAQEAVRK-GLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQD--GMTRDRCVHFAIKALLEAVE 198          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            RLFQ EYA+KAV+ A  T IG++ +D V +  +K V  KLL       +  + +++G+  TG   D + +V++AR EA  +R  YG  +P  V+A  + +  Q++T ++ +RP GV++ V + D E GP L+  +P G ++G+   +AG   Q A N LEK
Sbjct:   19 RLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK 177          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:   20 RVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 3.102e-22
Identity = 63/187 (33.69%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +AVK  G  +IG+R +  V +    K   +L  H     +F +  ++G+   G+TAD R L +  R E+    F Y   +PV  L   +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  +LE++ ++    + ++ ++ AI  ++  LQ
Sbjct:   18 RLFQVEYAMEAVKQ-GSAAIGLRSRSHVVLACVNKAQSELSSHQR--KIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            +++QVEYA +AVK  G  ++GV+ K  V +  +K+    L D +S+  ++ I +++    +G+ ADAR L+  AR  A   RF Y   + V+ L K + +  Q YTQ    RP GV  ++  +D   G RL++ DP+G + G+ AT+ G +      FLEK  K D      E ++ A+  L S ++
Sbjct:   21 KIYQVEYAGEAVKR-GWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRH-GARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFD--MEMGECIELALKALASAVE 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 63/184 (34.24%), Postives = 99/184 (53.80%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQS 554
            RL+QVEYA +AVK  G  SIGVR  + V +   K+    L++ TSV  +     ++G+ + G  ADAR L+  AR+++   R +YG  + ++ L K + D  Q YTQ    RP GV  ++  + E   PRL++ DP+G  +  KA S G    +    LE+  ++D   T  E ++ A+  + S
Sbjct:   22 RLYQVEYAREAVKR-GTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGV-ENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDD--LTLDEGIELALEAIAS 201          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:   20 RVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA7A_ORYSI1.066e-2234.22Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA5_SCHPO1.066e-2232.64Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_SCHPO1.066e-2235.98Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA7_TRYBB1.818e-2232.26Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA3_SCHPO3.102e-2236.65Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA3_MOUSE3.102e-2237.89Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA1A_ARATH3.102e-2233.69Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSMA_PYRAE4.051e-2233.16Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA1_HALVO4.051e-2234.24Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA3_RAT4.051e-2237.89Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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