BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:   20 RVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.051e-22
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV+ +  T+IG+R KD V    +K V  KL +  S   LF + +++G+   G+ ADAR+L   AR EA+ FR  +GY +P+  LA  +A     YT ++ +RP G   M+ S     G +L+  DP+G  +G+   + G   Q A   +EK
Sbjct:   20 RVFQVEYAMKAVENSS-TAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEK 179          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.291e-22
Identity = 60/161 (37.27%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            +LFQV+YA KAV+ +G T + ++ KD V +  +K VP K+L   S   +  I  ++G+   G  ADAR L+ +AR EA  ++  YG  +P+ VL++ IA  + ++T +  +RP G    +  ID + GP+LF  +P+G   G+   S G  +Q A N LEK
Sbjct:   20 KLFQVDYANKAVENSG-TLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGID-QYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEK 178          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.910e-22
Identity = 67/185 (36.22%), Postives = 99/185 (53.51%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSV 557
            RL+QVEYA +AVK  G  SIGVR  D V +   K++   L++ +SV  +     ++G+ + G  ADAR L+  AR +A   + +YG  + V+ L K I D  Q YTQ    RP G VA+++       PRLF+ DP+G  +  KA + G    +  ++LE+    D      E V  A++ L SV
Sbjct:   22 RLYQVEYAREAVKR-GTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFG-VALIIGGIVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHY--DEGMDLDEGVDLALAALASV 202          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.910e-22
Identity = 65/193 (33.68%), Postives = 104/193 (53.89%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHA-----YMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAIN-FLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            R+FQ+EYA +A+K  G TS+G++  D+V +  +K+VP  L+D +SV  +  I  ++G + +GM ADAR LV  AR EA   RF Y   M V+  A    D S  + +         RP GV  ++  +DE  GP+L++ DP+G +  + A + G   + A   F E+  +N    T +E     +  L+ V++
Sbjct:   20 RIFQIEYAIEAIKL-GSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRN---MTVEEAENLTVQILRQVME 207          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.025e-22
Identity = 62/183 (33.88%), Postives = 95/183 (51.91%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            RL Q+EYA  A  + G T++GV+  D V +  +KK    L D  ++  +F +  ++G   +G+  D R LV  AR     +R  Y   MP+  L + I+   Q +TQ   +RP G   +V   D   G  L++ DP+G F+  KATS G    +A  FLEK+  N+     ++ V TA+ TL+
Sbjct:   16 RLVQIEYATTAA-SKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSR-GNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNE--MEIEDAVHTALLTLK 194          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.179e-21
Identity = 62/192 (32.29%), Postives = 102/192 (53.12%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGL------LATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            LFQVEYA +AVK  G T++G+RG + V +  +KK   KL D  +V  +  +  ++ +      +  G+TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++   RL++ DP+G +   KA + G   +    FLEK    D   +  E ++ AI  L  V+Q
Sbjct:   18 LFQVEYAQEAVKK-GSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQ 208          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG +++GV   D V +V +KKV  KLL  + S   ++ I  +L     G+ +DA  L+  AR  A  +   Y   +PV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  ++    T +E V  A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GLTREEAVALALKVLSKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG +++GV   D V +V +KKV  KLL  + S   ++ I  +L     G+ +DA  L+  AR  A  +   Y   +PV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  ++    T +E V  A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GLTREEAVALALKVLSKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG +++GV   D V +V +KKV  KLL  + S   ++ I  +L     G+ +DA  L+  AR  A  +   Y   +PV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  ++    T +E V  A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GMTREEAVALALKVLSKTM 200          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA3_HUMAN4.051e-2237.89Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN4.051e-2237.89Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_DICDI5.291e-2237.27Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSMA1_HALMA6.910e-2236.22Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA5_TRYBB6.910e-2233.68Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA2_TRYBB9.025e-2233.88Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA7L_HUMAN1.179e-2132.29Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA4B_ORYSJ1.539e-2133.16Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI1.539e-2133.16Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ1.539e-2133.16Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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