BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.539e-21
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG +++GV   D V +V +KKV  KLL  + S   ++ I  +L     G+ +DA  L+  AR  A  +   Y   +PV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KA + G   Q A + L++  ++    T +E V  A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GMTREEAVALALKVLSKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.626e-21
Identity = 63/182 (34.62%), Postives = 97/182 (53.30%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 548
            RLFQVEYA +AV   G  ++GV+G D V +   K+ P   L        F + +++G+  +G+ AD R L +  R E   +R+ +  + P+ +LA  +  K Q + Q A  RP GV  ++   D + GPRL++  P+G  F  KAT+ GL+ Q A  +LE+  +  PA    E V  A+  L
Sbjct:   18 RLFQVEYANEAVNN-GSAAVGVKGADYVVLTALKRNPVSGLSSYQ-EKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQ-GPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRAL 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 62/182 (34.07%), Postives = 96/182 (52.75%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 548
            RL+QVEYA +AVK  G  S+G+R  D + +   K+    L++ TSV  +     ++G+ + G  ADAR L+  AR +A   R +YG  + ++ L K + D  Q YTQ    RP GV  ++  I E+  PRL++ DP+G  +  KA S G    +    LE+    +   +  E V  A+ T+
Sbjct:   22 RLYQVEYAREAVKR-GTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGI-EDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEE--LSLDEGVGLALRTI 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 61/191 (31.94%), Postives = 111/191 (58.12%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVY----TQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +AVK  G TSIG++  + V +  +K+   KL+ + ++  +  + +++G+   G+ AD+RTLV++A+ EA  F F Y  ++ V+ + + +A+ +  +     + +  RP GV  +   +D+E G +LF  DP+G F   KA S G     A   L+++  +  A T +E ++ A++ L+ V++
Sbjct:   20 RLFQVEYAIEAVKL-GSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHD--ALTIKEGLKMALAILKQVME 206          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.429e-21
Identity = 59/164 (35.98%), Postives = 94/164 (57.32%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 491
            RL+QVEYA +A   +G T +G+  K+ V + T++ V DKL+D +  V  +  + + +   ATG TAD   LV Q R  A +++F +G  +P + L   + D  Q YTQ+   RP GV  + +  D   G +L++ DP+G++ G KAT  G K   A+  L+K++
Sbjct:   17 RLYQVEYAMEAASQSG-TCVGLLAKNGVLLATERSV-DKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKEL 178          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.978e-21
Identity = 63/185 (34.05%), Postives = 97/185 (52.43%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSV 557
            RL+QVEYA +AVK  G  S+GVR +D V +   +     L++  S+  +  I  ++G+ + G  ADAR L+  AR ++   R +Y     V+ L K I D  Q YTQ    RP GV  +V  I E+  PRLF+ DP+G  +  +A + G   ++   FLE++         +  ++ A+  L SV
Sbjct:   21 RLYQVEYAREAVKR-GTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGI-EDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAE--GMDLEGGIELALRALASV 201          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.978e-21
Identity = 63/183 (34.43%), Postives = 95/183 (51.91%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV + G  S+G+   + V + T+ K    L +  SV  +  I  ++G++ +GM  D R LV+QAR  A  +   Y   +PV  L + +A   Q YTQ   +RP GV  ++   D +  P L++ DP+G +F  KAT+ G        FLEK+   D      + V TAI TL+
Sbjct:   18 KLVQLEYALAAV-SGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDND-RPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSED--LELDDAVHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.303e-20
Identity = 58/161 (36.02%), Postives = 92/161 (57.14%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            RL+QVEYA +AVK  G  SIG+R +D V +V  K++   L++ TSV  +     ++G+ + G  ADAR L+  AR +A   + +Y   + V+ L K + D  Q YTQ    RP G VA+++   E+  PRL++ DP+G  +  +A + G    +   +LE+
Sbjct:   22 RLYQVEYAREAVKR-GTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFG-VALIIGGIEDGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEE 180          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.303e-20
Identity = 59/188 (31.38%), Postives = 102/188 (54.26%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID-EECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RL QVEY  +AV+  G T+I +RG + + +  ++K   KL + ++   +  +  ++ L   G+ ADAR L+ +AR EA   +      + ++ L +++A   Q YTQ   +RP GV  ++   D  +  PR+++ +PAG +   KAT+ G   + A  +LEK  K     +  ET+  A+S+L  V+Q
Sbjct:   16 RLLQVEYGQEAVRR-GTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKE--GLSRDETIHLAVSSLLEVVQ 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.702e-20
Identity = 57/192 (29.69%), Postives = 108/192 (56.25%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQVEYA +A+K  G T+IG++  + VC+  +K++   L++ +S+  +  I  ++G   +G+ ADA+TL+ +AR E     F Y   M V+ + + +++ +  + +      A  RP GV  +   +DE+ GP+LF  DP+G F    A + G   + A + L++      + T +E +++++  L+ V++
Sbjct:   20 RLFQVEYAIEAIKL-GSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHK--SMTLKEAIKSSLIILKQVME 207          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA4A_ORYSI1.539e-2133.16Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA1_TRYBR2.626e-2134.62Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMA_HALWD3.429e-2134.07Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA5_CAEEL3.429e-2131.94Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA4L_DROME3.429e-2135.98Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSMA2_HALMA9.978e-2134.05Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA2_DROME9.978e-2134.43Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA_NATPD1.303e-2036.02Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA7_SCHPO1.303e-2031.38Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA5_MOUSE1.702e-2029.69Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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