BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 58/182 (31.87%), Postives = 93/182 (51.10%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTL 548
            RLFQVEYA +AV   G  ++G + KD V +   K+ P           +F +  ++G+   G+ AD R L +  R E   +R+ +  + P+ ++A+ + +K Q + Q A  RP GV  ++   D   GP L+   P+G  F  KAT+ GL+ Q A  +LEK  ++ P     E +  A+  L
Sbjct:   18 RLFQVEYANEAVNN-GSAAVGAKNKDFVVLTALKRSPVAQFSSYQ-EKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKAL 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHRK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.441e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.882e-19
Identity = 57/186 (30.65%), Postives = 92/186 (49.46%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            R+ Q+EYA +AVK    T +G++ K    +V  K+   +L  H     +  +  ++G+   G+TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L
Sbjct:   18 RIHQIEYAMEAVKQGSAT-VGLKSKTHAVLVALKRAQSELAAHQK--KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETL 199          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 61/190 (32.11%), Postives = 105/190 (55.26%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVT--HLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID-EECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM-KNDPAFTFQETVQTAISTLQSVLQ 563
            +FQVEYA +AVK  G  ++GV+GK+ V +  +++   KL D T +T   +  I  ++ L  +G+ AD+R L+++AR EA   R      + V+ L +++A   Q YTQ   +RP GV  ++   D  +  P+L++ +P+G +    A + G   +    FLEK   + +P  T +E V+  + +L  V+Q
Sbjct:   17 IFQVEYALEAVKR-GTCAVGVKGKNCVVLGCERRSTLKLQD-TRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 53/160 (33.12%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            L QVEYA +AV+    +++G+R K+ V +  +K+  D L    +   +  I +++ +   G+TADAR LV +A+ EA   R  +     V+ + +++A   Q YTQ    RP GV  ++   DE+  PRLF+ DP+G ++   A + G   Q    +LEK
Sbjct:   16 LLQVEYAQEAVRKG--STVGLRTKECVVLGVEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEK 173          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.458e-19
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AGV ++G+  KD + +  +KKV  KLL+   S   L+ I   +     G+TADA  L+  AR    ++   +  EMP + L + + D  Q YTQ+  +RP GV  +    D   G +LF+ +P+G++   +A S G       + + ++ K+D      E    A+  L   L
Sbjct:   17 RLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDD--INLDEASAMAVKFLSKTL 200          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_TRYCR1.441e-1931.87Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_PONAB1.441e-1930.65Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_MOUSE1.441e-1930.65Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA1.441e-1930.65Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN1.441e-1930.65Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN1.441e-1930.65Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA1_RAT1.882e-1930.65Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA7_YEAST2.458e-1932.11Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA73_DROVI2.458e-1933.13Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA4_SCHPO2.458e-1931.55Probable proteasome subunit alpha type-4 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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