BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10887 contig Csv1_Contig10887:216..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.262e-15
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV  +G T +G++ KD + +  +K V  K++   S   +  +  + GL   G+ AD R +V +A+ EAA +   YG  + V  LA  +A    + T + ++RP G   ++   D + GP+L+  +P+G  + +   + G   Q A   +EK
Sbjct:   20 RVFQVEYATKAVDNSG-TVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEK 178          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.262e-15
Identity = 55/161 (34.16%), Postives = 82/161 (50.93%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEK 485
            R+FQVEYA KAV  AG T I +RGK+ V VV  K +  KL    +   +F +   +G+   G   D   L   A  EA ++   Y   MP+  +A  +A+   ++T     RP G  A  +S +++ G RLF  +P+G  + +KA + G   Q A   +EK
Sbjct:   20 RIFQVEYAQKAVDNAG-TMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEK 178          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 53/192 (27.60%), Postives = 99/192 (51.56%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQH-----AYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            R+ Q+EYA KA+   G T+IGVR K+ V + ++KK+   L +  SV   + I  ++ L  +G++ D +T+V+++R         YG  + V+ L K+++  S  + +       + RP GV  ++   D E  PRL+  DP+G +  +KA + G   +     LE + +        ++++  + TL  V++
Sbjct:   16 RIHQIEYAMKAMNL-GTTTIGVRTKEFVILCSEKKILSTLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTE--PRLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSG--LDQSLRKVLCTLSKVMK 202          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 47/163 (28.83%), Postives = 79/163 (48.47%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 491
            RLFQVEYA +A+K   VT +G+R      +V  K+  D+L  +     +    +++GL   G+  DAR L    R +       +  ++ V+     + DK+Q  TQ    RP GV  +++  D+  G  L +  P+G+      T+ G + Q A  +LE+ +
Sbjct:   18 RLFQVEYALEAIKQGSVT-VGLRSNTHAVLVALKRNADELSSYQK--KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL 176          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA3_ORYSJ1.262e-1531.68Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_CAEEL1.262e-1534.16Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA5_ENCCU2.153e-1527.60Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA1_YEAST3.800e-1228.83Proteasome component PRE5 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
back to top