BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.427e-28
Identity = 68/186 (36.56%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K SV + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+LF  +P+G +  ++A + G     A  FLEK  K D     +ET+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LNVEETILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.101e-27
Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L    +
Sbjct:   22 RLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSED--MTVNEGMELALYALSKTTE 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/186 (35.48%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T+IG++ K  V + ++K+    LLD  S+  +F I  ++G    G+ +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+
Sbjct:   23 LYQVDYAFEAVKK-GWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 66/166 (39.76%), Postives = 100/166 (60.24%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 500
            RLFQVEYA +AVK  G TS+GV+ K+ + +V  K+   KL++  S+  +F I +++G   +G+ ADAR ++++AR EA   R  Y   + V+ LAK I D  Q+YTQH  +RP G   ++  ++   G RLF+ DP+G    +KAT+ G     A+   EKK  +D
Sbjct:   21 RLFQVEYAREAVKR-GTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGR-GCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDD 184          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.452e-27
Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RL+QVEYA +AV+  G T++G++ KD V +   +++  KL+D +S+  +F I  ++    +G+ ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L    +
Sbjct:   22 RLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKY--DENMTVNEGMELALYALSKTTE 204          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_SULSO8.427e-2836.56Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_METM51.101e-2736.90Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULIY2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA2.452e-2735.48Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_METTH2.452e-2739.76Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METM72.452e-2736.90Proteasome subunit alpha OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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