BQ623304

Overview
NameBQ623304
Unique NameBQ623304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.711e-26
Identity = 64/187 (34.22%), Postives = 108/187 (57.75%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ ADAR LV +AR EA   R  YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+K K+D   + +E ++ AI  L   ++
Sbjct:   22 RLFQVNYAREAVKR-GATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDD--MSLEEAIKLAIFALAKTME 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.711e-26
Identity = 61/166 (36.75%), Postives = 97/166 (58.43%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 500
            RLFQVEYA +AVK  G T++G++  D V ++  K++  +L++  S+  +F I  ++G   +G+ ADAR+LV +AR EA   R  Y   + V+V++K I D  Q YTQ+  +RP G   ++  +D+   PRLF+ DP+G    +KAT+ G      +   E   + D
Sbjct:   21 RLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDN-KPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYRED 184          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.624e-26
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RL+QVEYA +AV+  G T++G++  D V +   +++  KL+D +S+  +F I  ++    +G+ ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D      E ++ A+  L    +
Sbjct:   22 RLYQVEYAREAVRR-GTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKY--DENMIVSEGMELALYALSKTTE 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.888e-26
Identity = 62/187 (33.16%), Postives = 107/187 (57.22%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQV YA +AVK  G T++GV+  + V +  +K++  +L++  S   +F I  ++   ++G+ ADAR LV +AR EA  +R  YG   PV V+ K I D  Q++TQ+  +RP G   ++  I++   P L++ DP+G +F  KA + G     A+   E+K ++D     ++ ++ A+  L   ++
Sbjct:   22 RLFQVNYAREAVKR-GATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDD--MNLEDAIKLALMALAKTME 203          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 7.888e-26
Identity = 69/183 (37.70%), Postives = 103/183 (56.28%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+EYA  AV AAG  S+G++  + V + T+KK    L D  SV  + PITK++G++ +GM  D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE+  P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+
Sbjct:   18 KLVQIEYALAAV-AAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDED-RPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.030e-25
Identity = 65/186 (34.95%), Postives = 109/186 (58.60%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV+YAF+AVK  G T++GV+ K++V ++ +KK   +LLD  S+  +F +  ++G    G+ +D R L+  AR  + + R  Y   + +D L K I+D  Q+YTQH  +RP GV  +V  +D     +LF  +P+G F  ++A + G     A ++LEK  K D   + +ET+  A++ L+  L+
Sbjct:   23 LYQVDYAFEAVKK-GWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKED--LSVEETILLALNALKVTLK 204          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.030e-25
Identity = 66/183 (36.07%), Postives = 115/183 (62.84%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 551
            +L Q+E+A +A  A+G ++IG++ K+ V ++T+KK+   L+D TSV  +  IT+ +GL+  GM  D+R L+++AR E+ ++  +Y  ++PV  L + +A   Q +TQ   +RP GV  +V   DE+ GP L++ DP+G +F  KAT+ G     +  FLEK+  +D     ++ +QTA+ T++
Sbjct:   17 KLVQIEHALQAA-ASGGSAIGIKAKNGVVLITEKKL-HSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDD--LEIEDAIQTALITIK 194          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.345e-25
Identity = 60/186 (32.26%), Postives = 102/186 (54.84%), Query Frame = 3
Query:    6 LFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            L+QV YAF+AVK  G TS+G++  + V +  +K+    L+D   +  ++ I  ++G+   GM  D R L+  AR      R  YG   PV+++AK +AD  Q YTQH  +RP GV  +   ++ +   ++++ DP G +F  KA + G  EQ A    EK  ++D   + +E  + A+  L ++++
Sbjct:   25 LYQVRYAFEAVKK-GWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSD--MSLEEATKLALKILYAIIR 207          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.345e-25
Identity = 68/187 (36.36%), Postives = 104/187 (55.61%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL 560
            RL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ+  + P GV  +    D+  G +LF  DP+G++ G KA + G   Q A + L++  K+D   T +E VQ A+  L   +
Sbjct:   17 RLYQVEYAMEAIGNAG-SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKDD--ITREEAVQLALKVLSKTM 200          
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.997e-25
Identity = 64/187 (34.22%), Postives = 105/187 (56.15%), Query Frame = 3
Query:    3 RLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ 563
            RLFQV YA +AVK  G T++GV+ K  V +  +K++  +L++ +S   +F I  ++    +G+ ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+   +D     +  ++ AI  L   L+
Sbjct:   22 RLFQVNYAREAVKR-GATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDD--IDMEGAIKLAILALAKTLE 203          
The following BLAST results are available for this feature:
BLAST of BQ623304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_PYRHO2.711e-2634.22Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_METMA2.711e-2636.75Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METM64.624e-2635.83Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_PYRFU7.888e-2633.16Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA2_CARAU7.888e-2637.70Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_METS51.030e-2534.95Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA2_DICDI1.030e-2536.07Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_AERPE1.345e-2532.26Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA4_PETHY1.345e-2536.36Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSMA_THEGJ2.997e-2534.22Proteasome subunit alpha OS=Thermococcus gammatole... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00395 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00395 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623304 ID=BQ623304; Name=BQ623304; organism=Citrus sinensis; type=EST; length=563bp
GTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
GTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCTGTGTTGTGACTCA
GAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGTGTCACACATCTTT
TCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGGAATGACAGCTGAT
GCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCGCTGAGTTTCGCTT
CAAATATGGATATGAAATGCCTGTGGATGTGTTAGCCAAATGGATTGCAG
ACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTGTA
GTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTTAA
GTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGGAT
TGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAAGATGAAGAATGAT
CCTGCGTTTACCTTTCAAGAAACTGTGCAGACTGCAATTTCCACCCTGCA
ATCAGTCCTGCAA
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